| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0366 |
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| Symbol | acfC |
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| ID | 5136801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 394120 |
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| End bp | 394890 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640531824 |
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| Product | accessory colonization factor AcfC |
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| Protein accession | YP_001216322 |
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| Protein GI | 147673127 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4588] Accessory colonization factor AcfC, contains ABC-type periplasmic domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATTTCA TGAAAAGTAA GAATCGATTT TTATTAATTT CTTTACTATC ATTTTCTACG
AGTGTTTTTG CGGATGTTAA TCTTTATGGA CCTGGTGGTC CACATGTGCC ATTGATTAAA
GTTGCAGAAA GTTTTGAAAA ATCACAATCA AAACGCGTTA ATATTACTTT TGGACCTCAA
GCTACTTGGA ATGACAAAGC AAAAAAAAAT GCTGATATTT TATTCGGTGC ATCAGAACAT
TCTGCTCTAG CTATTGCAGA AGGACATAGT GAAAGATTTT CAAAATTTAA TATTCATCCT
GTATTCATGC GTGAAGCAAT TATCTTAGTA AAAAAAGGTA ATCCGAAAAA TATTAAGGGT
ATGGCTGATC TTTTGAAGCC TGGTATCGGA ATCGTCGTAA ATGATGGAGC AGGTGTAAGT
AATACATCGG GCACTGCTGT TTGGGAAGAT TCAGTTGGTA GAATGAAAAA TGTTGAGAAA
CTCCAGGCAT TTAGATCTAA TATTCACGTT TTTGCCCCAA ATAGTGGATC AGCGCGTAAG
GCGTTTGTTG ATGGTGAAGA TATTGATGCA TGGATTACAT GGGTCGATTG GGCCATAGCT
AATCCAACAA TCGGCGATAT GGTTAGAATG GAGGATGAAT ATCGTATTTA TCGTGACTTC
AACGTTGTTC TTGCCAAAAA TCCATCTAGT GAAGCGATTG ACTTTTTTGA TTATCTAACA
AAAAGCAAAG ACGCTGAAGC AATCTTTCAG CACTATGGCT GGTTTAAGTG A
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| Protein sequence | MYFMKSKNRF LLISLLSFST SVFADVNLYG PGGPHVPLIK VAESFEKSQS KRVNITFGPQ
ATWNDKAKKN ADILFGASEH SALAIAEGHS ERFSKFNIHP VFMREAIILV KKGNPKNIKG
MADLLKPGIG IVVNDGAGVS NTSGTAVWED SVGRMKNVEK LQAFRSNIHV FAPNSGSARK
AFVDGEDIDA WITWVDWAIA NPTIGDMVRM EDEYRIYRDF NVVLAKNPSS EAIDFFDYLT
KSKDAEAIFQ HYGWFK
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