| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0361 |
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| Symbol | tcpE |
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| ID | 5137918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 388381 |
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| End bp | 389403 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640531819 |
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| Product | toxin co-regulated pilus biosynthesis protein E |
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| Protein accession | YP_001216317 |
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| Protein GI | 147675450 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.358963 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATTA TCTCCAAGAA GTATAGGCTA GAACTTTATT CAATGCTTGT GGACTTATTG
AATGATAATA TCCCACTCTA TGATGCATTA AATAAAATAC AAAATGAGGG AGTGGGCATC
TATGATAAGA ATTTTATTAA ATCCATTGAA TTAATTAAGG ATAGGATGAA AAGTAATTCA
TCACTAACGG ATGCCTTAAC TGGACTAATA CCAGATAAAG AAGTTTTGAT GATTAATGTT
GCAGAAAACT CAGGTAAGAT TTCGAGTGGT ATTGCTGCAA TACGCAAAAA CATTATCGAT
GCAGATGAGA TCAAATCTAA AGCTATCTCA TCTATGATCA CGCCTAGCGT GATGCTTATC
GTGACTATGG TTGTTATTGC TGGCTATTCA GTAAAAGTAT TTCCCACATT TGAGTCTGTA
CTTCCTGTGA GCCGGTGGCC CGGTGTTACC CAAGCACTTT ATAACCTTGG ATTTTCATTG
TATGAAGGCT TGTGGATCAA AGTTCTTATT TTTGTCGCTA TCTTCATTAC GATTTTAGTT
TTTATGTCTA AAAACATTAC AGGGAATTTC AGAGATGGTT TTTTAGATAA GCTGCCACCT
TTTAATTTTG TAAAGCATAT TGCAGCAACA GAATTTTTGG CCAATATGTC CATGTTGCTA
GATAGTCGAG TCCCATTTAA AGAAGGTCTG GACATTGTCG ATCATAAAAC GACACGCTGG
CTCTCCTCAC ATTTGCAAAG AATGAAAGCT AACATGCAAG AAGGGCTAGA CTACAAACAG
GCTCTCGACA CCAATTTACT AGATAAAAAA ATGCTCCTGA CAATGGCTGT TTATTCAGAA
CTACCTAATT TTTCGGATGT AATGCAAAAA TTAGCTATTG AAGCCAATAT AAATCTACAT
AAAAAAATTG CCACTTTAGC AGGGGTAATG AAAAATATTT CACTAATAAC GTTGGCGTTG
TCTGTGATTT GGATCTTCGG TGCGATCTTT TCGCTCGTTG ATAAACTAAG TTCATCTTTA
TAG
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| Protein sequence | MKIISKKYRL ELYSMLVDLL NDNIPLYDAL NKIQNEGVGI YDKNFIKSIE LIKDRMKSNS
SLTDALTGLI PDKEVLMINV AENSGKISSG IAAIRKNIID ADEIKSKAIS SMITPSVMLI
VTMVVIAGYS VKVFPTFESV LPVSRWPGVT QALYNLGFSL YEGLWIKVLI FVAIFITILV
FMSKNITGNF RDGFLDKLPP FNFVKHIAAT EFLANMSMLL DSRVPFKEGL DIVDHKTTRW
LSSHLQRMKA NMQEGLDYKQ ALDTNLLDKK MLLTMAVYSE LPNFSDVMQK LAIEANINLH
KKIATLAGVM KNISLITLAL SVIWIFGAIF SLVDKLSSSL
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