| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0191 |
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| Symbol | srmB |
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| ID | 5136343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 196365 |
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| End bp | 197636 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640531651 |
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| Product | ATP-dependent RNA helicase SrmB |
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| Protein accession | YP_001216154 |
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| Protein GI | 147674594 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATTAAAA CCTTTGCCGA CCTCGAACTC GATCCAATTT TGCTTGAAGC GATCGAAGAA
ATGGGCTTTA GCCGCCCAAC CCAAGTTCAG GCTGAAGCAA TCCCGCAAGC ACTGGATGGT
CGCGATGTCT TAGCCTCAGC CCCAACAGGC ACGGGTAAAA CGGCGGCTTT CGTGATCCCA
GCGCTGCAAT ATTTGCTCGA TTTCCCACGC CGTAAAGCGG GTCCTGCGCG GATTTTGATC
CTCACTCCGA CTCGTGAACT GGCGATGCAA GTGGCTGAAC AAGCACAAGC GCTGGCCAAA
AATACTCGTC TGAACATTTT CACCATTACC GGTGGTGTTC AGTACCAAGA GCACGCCGAT
ATTCTGGCCA CGACTCAAGA TATCGTGGTC GCCACACCAG GACGTCTGCT GGAATACATT
GACGCCGAGC GCTTTGATTG TCGTGCGATT GAGTGGCTGA TCCTCGATGA AGCGGACCGC
ATGCTGGATA TGGGCTTTGG CCCAACCGTT GACCGCCTTT CAACCGAGTG TCGCTGGCGT
AAACAGACAC TGCTCTTCTC TGCGACTTTA GAAGGCCGCG GTGTGGAAGG CTTTACTGCC
GATCTGTTAA AAGATCCCGC CCATGTCGAT GCCGAGCCAC CCCGTCGTGA GCGTAAGAAA
ATTTCGCAGT GGTACCACCG CGCCGATGAT ATGCCTCACA AAGTGGAACT GCTGAAAAAG
ATCCTGACCG AGCAAGCTGA ACGTTCTATC GTGTTTTTGA AAACTCGTGA GCGTCTCGCA
GACCTGCGTG CTGAGCTGGA GAAAGCCCAG ATCCCTTGTG CTTGGATTCA AGGTGAAATG
CCGCAAGATC GCCGTAACAA TGCGATCAGC CGTTTCCGTG AAGGCGATGT CAATATTCTG
CTGGCTACCG ATGTGGCGGC GCGTGGTATT GATGTGCCAG ACATCAGCCA TGTGATCAAC
TTTGACTTGC CACGCAGTGC TGACGTTTAC CTACACCGTA TTGGTCGCAC CGGACGTGCA
GGGAAAAAAG GTATTGCTAT TTCACTGGTT GAAGCGCACG ACCAGCCGAT GATGGCGCGT
GTTGAACGTT ACATCAAAGA AGAAGTTAAA GAGCGCTTTA TTGATGGTTT ACGCCCTAAG
CACAAAAAGC CTGTGTTTAA GAAAAAGAAA AAAGACAGCA AGAAAACCGC AGACAAAGGC
GCGGTGAAAA AGAAAACCAC CAGCAAGCCA AAAGCAAAAG CGACCAAGAA GAAAGCCGCG
ACCAAAGCCT AA
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| Protein sequence | MIKTFADLEL DPILLEAIEE MGFSRPTQVQ AEAIPQALDG RDVLASAPTG TGKTAAFVIP
ALQYLLDFPR RKAGPARILI LTPTRELAMQ VAEQAQALAK NTRLNIFTIT GGVQYQEHAD
ILATTQDIVV ATPGRLLEYI DAERFDCRAI EWLILDEADR MLDMGFGPTV DRLSTECRWR
KQTLLFSATL EGRGVEGFTA DLLKDPAHVD AEPPRRERKK ISQWYHRADD MPHKVELLKK
ILTEQAERSI VFLKTRERLA DLRAELEKAQ IPCAWIQGEM PQDRRNNAIS RFREGDVNIL
LATDVAARGI DVPDISHVIN FDLPRSADVY LHRIGRTGRA GKKGIAISLV EAHDQPMMAR
VERYIKEEVK ERFIDGLRPK HKKPVFKKKK KDSKKTADKG AVKKKTTSKP KAKATKKKAA
TKA
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