| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1112 |
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| Symbol | |
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| ID | 5134565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 1076945 |
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| End bp | 1079077 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640531434 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001215948 |
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| Protein GI | 147671600 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.806835 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCCTC GAACCCTACT CAAAAGAGTT ACCTCAAGTC GTAATTATCG AATGTTGGCC
GAGACCACGT TTGAGTACTT AACGACATTT CTATTATCGC AATCAGCTGG GATCGTACGA
GCACCATCTC AAGACGTGGC AGGTCACACC TTACTCTCTT CCAACACGTT TACGCCGCTA
GAAGCGTATC CTGAAGCCTT TTGGGCATGG GCTGCGCAGT TTGATACTTC CGATGGCTTG
ATCCCTTTTG CCATCAATAC CTGTCGCTGG AACTATTTGC CAGTGATGGG CGGTGAGTCG
TTTATTTTTA TGCTGGATAA TCATCCTCAG CATCGGACTT ATCTGATCAT TCAAGCGGCA
TGCGTCGATA AAGTACACCT GAGCACTCAA TCCGGTGAGT TGGATTTTTT ACAGTTAATT
GCAGCGAAAT GGCAATGCTT ACGAGCGGAA ATTGAAGCAT CGAAAGAGTT TAAAAATCGT
GATTTACGTG AGGCGCAGTA CCTTAGTGAA ATTCGTCAGC GAGAGCAGTT TATTGACAAC
ATGAAGCTGG TGCATCAAGT CGCGCTCGAG TTGTCCAACC CCGCCAATCT TGATGAGCTA
CACCGCGCAT CGGTCGAGGC TATGCGACAT CGTCTCGGGT TTGATCGATC CGCGCTCTTG
TTGCTTGATA TGAAAAAGCG TTGCTTCAGC GGTACTTATG GTACCGATGA GCACGGTAAT
ACGATTGATG AACAGCACAC CCAGTATGAT CTGCACCAAT TAGAGCCTCA ATATCTCGAA
GCTTTATCCA ATGAAGAGTG CACTTTGATG GTGGTAGAAG ATGTGCCTTT GTACACCGTC
GGACAGGTAG TGGGACAAGG CTGGAATGCC ATGCTGATTT TGCGTGATGG TAATGACACC
ATAGGCTGGA TTGCCATCGA CAACTATATC AATCGGCAGC CGATTACCGA GTATCAAAAA
CAGATGCTTG AGTCGTTTGG CTCATTGCTC GCGCAAATTT ATATTCGTAA AAAGCAGGAA
CAAAACGTAC GTATGCTGCA TGCCAGCATG GTCGAACTGT CTCGCTGTAT GACAGTCAGT
GAAGTGTGTA AATCGGCAGT CACCTTTGCG ATCAACCGAA TGGGGATTGA TCGCATGGCG
GTGTTTTTGA CAGATGAAGC TTGCTCTTAT ATTCAGGGGA CGTGGGGGAC GGATATTCAA
GGCAATATTG TCGATGAATC CTATTTCCGT GGTTCAACGC ATGAAAATGA CATTGTCGAC
CTTGCCAAAG TGTACCCAAA CGAAGTGGTG TTTAAAGAGA GTGTTCCCAT CTATCACGAC
TGTAAAATTG TAGGTTATGG TTGGACGGCG ATGACCATGC TCACCGACAA AGGCACCCCG
ATTGCCTTTA TTGCGGCGGA TAATTTGATC CGACGTTCCC CCTTGACTTC ACAACTGCGT
GAAGTGATTC GTATGTTTGC TTCAAACCTC ACCGAAGTCT TGATGCGAGC CAAAGCCCAA
GAAGCGATCT CGGTACTCAA TGAAACGCTG GAGCTTGAGG TGCGTAATCG CACTCGTGAT
TTGCAAAAAG CCAACGAAAA ACTCGATTTA ATGGCGAAAT TAGATCCGCT GACTCGTTTA
GGGAATCGCC GTATGCTTGA GCACCAACTG GAGCAAACTT GCGAACAGAC CATCAAAGAG
GTGGTCAATT ATGGCGTGAT CTTGCTCGAT ATTGACCATT TCGGGCTTTT CAACAACTGC
TATGGTCATC TTGAAGGCGA TATTGCTCTG ATGCGGATTG GTAATATCCT CAGTCGACAT
GCGCAATCTG AGCATGAACT GTTCTGTCGT ATTGGTGGGG AAGAGTTTCT GCTTTTAGTC
GCCAATCGAA GCGCCGAGGA GATTCACTTA CTGGCTGAAA ATATTCGTAA AAGTATTGAA
GCTGAATGCA TAGAACACTG CGAAAATCCC AGTGGTGAGC TACTGACCGT ATCGATTGGT
TATGCTGCTT CTCGTTATAA ACCGCGAGAG ATTCAATTTG ATCAGCTCTA TGCAGAAGCG
GATAAAGCCT TGTACAGAGC GAAAAGCCAA GGACGGAATC AGGTTATTGG CGTTATTGTT
GAAAATATCG ACTGCATACA GGTAGAAATG TAG
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| Protein sequence | MFPRTLLKRV TSSRNYRMLA ETTFEYLTTF LLSQSAGIVR APSQDVAGHT LLSSNTFTPL
EAYPEAFWAW AAQFDTSDGL IPFAINTCRW NYLPVMGGES FIFMLDNHPQ HRTYLIIQAA
CVDKVHLSTQ SGELDFLQLI AAKWQCLRAE IEASKEFKNR DLREAQYLSE IRQREQFIDN
MKLVHQVALE LSNPANLDEL HRASVEAMRH RLGFDRSALL LLDMKKRCFS GTYGTDEHGN
TIDEQHTQYD LHQLEPQYLE ALSNEECTLM VVEDVPLYTV GQVVGQGWNA MLILRDGNDT
IGWIAIDNYI NRQPITEYQK QMLESFGSLL AQIYIRKKQE QNVRMLHASM VELSRCMTVS
EVCKSAVTFA INRMGIDRMA VFLTDEACSY IQGTWGTDIQ GNIVDESYFR GSTHENDIVD
LAKVYPNEVV FKESVPIYHD CKIVGYGWTA MTMLTDKGTP IAFIAADNLI RRSPLTSQLR
EVIRMFASNL TEVLMRAKAQ EAISVLNETL ELEVRNRTRD LQKANEKLDL MAKLDPLTRL
GNRRMLEHQL EQTCEQTIKE VVNYGVILLD IDHFGLFNNC YGHLEGDIAL MRIGNILSRH
AQSEHELFCR IGGEEFLLLV ANRSAEEIHL LAENIRKSIE AECIEHCENP SGELLTVSIG
YAASRYKPRE IQFDQLYAEA DKALYRAKSQ GRNQVIGVIV ENIDCIQVEM
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