| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0979 |
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| Symbol | amy1 |
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| ID | 5135031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 954504 |
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| End bp | 955904 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640531301 |
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| Product | alpha-amylase |
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| Protein accession | YP_001215815 |
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| Protein GI | 147671416 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCAT CGTATGTTGT TCTTTGTGCC ACATTCGCGG CAGCAAGTTT TACTAGCAGC
GTACAAGCAG AAGCCATTTT GCATGCTTTT AACTGGAAAT ATGCAGATGT CACTGCGAAT
GCAGCACAGA TCGCCGCCGC AGGTTATAAA AAAGTGCTGA TCTCACCAGC ATTGAAATCC
AGCGGCAATG AATGGTGGGC TCGTTACCAA CCTCAAGATC TGCGAGTCAT TGACTCACCT
CTTGGCAACA AAACCGACTT ACAAACACTG ATCAAAACGC TGCAAGATTA CGGTGTTGAA
GTATATTCGG ATGTGGTGTT TAACCATATG GCAAACGAAA GTTGGAAGCG TAGTGATCTC
AATTATCCGG GCAGCGAAGT ACTAGCCAGC TACACTAACC AAGCTTATTA CTATCAACAA
CAGAAACTGT TCGGTGATTT GTCGCACAAT CTCTTCTCAC AAAATGATTT CCATCCTGAA
GGTTGTATTA CTGATTGGGG CAACCCCGGT CATGTTCAGT ATTGGAGGCT ATGCGGTGGC
GCAGGTGATC GCGGTCTACC AGACTTGGAT GCCAACGCTT GGGTCATCAA TCAACAGCGA
GCCTATTTAC AAGCGCTTAA GCAAATGGGT ATCAGAGGAT TTCGAATTGA TGCGGTTAAG
CACATGAGTC AATACCACAT TGACCAAGTC TTCACACCAG AGATTATTTC GGGCATGCAT
GTGTTTGGCG AAGTGATCAC AAGTGGGGGT CAAGGTGATG GCAGTTATGA TGCCTTCCTA
GCTCCTTATC TGAATAACAC CACACACGCC GCATACGACT TTCCTCTATT TGCCTCCATT
CGTGCCGCAT TTTCTTATCA AGGTTCGATG AGTCAATTGC ATGATCCACA AGCCTATGGA
CAAGCATTAC CAAACGCCCG CGCCATCACG TTTGCGATTA CCCATGATAT TCCCACTAAT
GATGGATTCC GTTATCAGAT CCTCAACCCG CAAGATGAGC AACTCGCTTA CGCTTATCTA
CTCGGGAAAG ATGGTGGAAC ACCGCTGATT TATAGTGATG ATCTGGCTGA TCACGAAGAT
AAAGATAATG GTCGTTGGGC GAATGTTTGG AATCAACCAT CAATGCAACA TATGCTGCGC
TTCCATAACG CAATGCAAGG TAAACCTATG ACGGTTATGT ATAGCGACTC ATGTTTGCTG
CTCTTCAAAC GGGGTAAGGA AGGTGTCGTA GGTATTAATA AATGTGGTGA GTCAAAAAAT
GTCACCATAG ATACTTATCA GCATGAATTT AACTGGTATC AGACCTATCA AGATACTTTA
AGTGACGACC GTTTTAGCGT GAGCAGTCGC TACCATACGT TAACTATCCC AGCACGTGTT
GCGCGCATGT GGATGCTGTA A
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| Protein sequence | MKSSYVVLCA TFAAASFTSS VQAEAILHAF NWKYADVTAN AAQIAAAGYK KVLISPALKS
SGNEWWARYQ PQDLRVIDSP LGNKTDLQTL IKTLQDYGVE VYSDVVFNHM ANESWKRSDL
NYPGSEVLAS YTNQAYYYQQ QKLFGDLSHN LFSQNDFHPE GCITDWGNPG HVQYWRLCGG
AGDRGLPDLD ANAWVINQQR AYLQALKQMG IRGFRIDAVK HMSQYHIDQV FTPEIISGMH
VFGEVITSGG QGDGSYDAFL APYLNNTTHA AYDFPLFASI RAAFSYQGSM SQLHDPQAYG
QALPNARAIT FAITHDIPTN DGFRYQILNP QDEQLAYAYL LGKDGGTPLI YSDDLADHED
KDNGRWANVW NQPSMQHMLR FHNAMQGKPM TVMYSDSCLL LFKRGKEGVV GINKCGESKN
VTIDTYQHEF NWYQTYQDTL SDDRFSVSSR YHTLTIPARV ARMWML
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