| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0964 |
|---|
| Symbol | |
|---|
| ID | 5134199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | + |
|---|
| Start bp | 942595 |
|---|
| End bp | 943368 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640531286 |
|---|
| Product | AraC/XylS family transcriptional regulator |
|---|
| Protein accession | YP_001215800 |
|---|
| Protein GI | 147671619 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 0.541857 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATTA TTGATCAACA GACCTCATTC GACCCAGATC GCTTACCCGC TTGCGTAGTG
GGCATTGCCG CTGACATAGG CAATCACGAT TCTGGGCTAC ATCAGCACCA GAAAGGTCAA
TTGCTGTTTG CTCCTCAAGG CTGCATTCGC TTCGCTCTAG ACGATTCAAT CTGTATTCTG
CCGCCGACCA AAGCGGTGTG GATACCGTCC GGCACTCGAC ATCGCGCCAT CATGACCAAT
GTCGTTGCTT ATCGTTCAAT CTACTTTGAT TGCCATGCCT TTAAGTGCCC AGACCACATC
ACCATGATTG AAGTGAACGC TTTACTCAAA GCGCTGATTG ATAAGATGGC ACTATGGTCA
TGGGATACCC CACAAGAGAG CATGAACAAT ACCACCACCT TATTTTGGGA AGAGTTCTAT
GCGGCTCAAC GCCAGACATT CCACCTCCCA TTGCCAACAA ATCGTCGATT TAAGGTATTC
CGAAAACAGT TAATGCAAGC GACGTTTTTC GCACCCGACC TTGTGTCACT AGCCAACTCA
GTGGGAGCGA GTAGCAAAAC CGTGACTCGG TTATTTAAAG CCGAAACAGG GATGTCATAT
CAAGAGTGGA AACAACAATG GCGTTTATTA AAAGCGATTG AACTGCTTTC AAAAGAGACA
CCCGTGAATC AGGTATCGGA TTGGCTTGGT TTTTCATCGG ATAGTGCCTT CATCGCCTTT
TTTAAAAAAC AGACTGGCCA GACACCCTTA AGCTTTATAA AAATAAGGCG TTAG
|
|---|
| Protein sequence | MAIIDQQTSF DPDRLPACVV GIAADIGNHD SGLHQHQKGQ LLFAPQGCIR FALDDSICIL
PPTKAVWIPS GTRHRAIMTN VVAYRSIYFD CHAFKCPDHI TMIEVNALLK ALIDKMALWS
WDTPQESMNN TTTLFWEEFY AAQRQTFHLP LPTNRRFKVF RKQLMQATFF APDLVSLANS
VGASSKTVTR LFKAETGMSY QEWKQQWRLL KAIELLSKET PVNQVSDWLG FSSDSAFIAF
FKKQTGQTPL SFIKIRR
|
|---|
| |