| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0572 |
|---|
| Symbol | |
|---|
| ID | 5134953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 626742 |
|---|
| End bp | 627782 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640530894 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001215411 |
|---|
| Protein GI | 147671548 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3180] Putative ammonia monooxygenase |
|---|
| TIGRFAM ID | [TIGR03082] membrane protein AbrB duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAAA GAGCTTCTTT CACACTCTTT ATTCAAATCT TGATTATCGC CACCGTGGCT
GCGGGGGCAG GGACGCTACT CTCCATCCCA CTTTCTGAAA TGTTTATTGC CTCGGGTTTG
GTTATTGTGC TGCACAAGAA GCGTTGGCTA ACTATTCATA CGCCGCCGTG GCTGCTGCTG
TTTGTGCAAG TCGTGCTTGG GATCAGTGTC GGTGCGACCA TCAGTTTGAG TGAGCTAGGT
ACCACCTTAA CCTTGCCGGT GATCGTGGGT TTGGTGTGCT GTTTAACGCT GCAAATCATC
AGTAGCTATT TGTGGCTCAC CAAAAAAGAG GGTTGGACGC CGTTTGAATC TCTACTCGGT
GCCGTACCGG GTGCAATGGC CGCGATTTTG GTGATCAGCG AATCAAGCGA AAAGCCTTCC
GCCAAAGTGG TCTATTCCCA TTCTGTGCGA CTGATGATCC TCACTTTGTT GGCACTGTTG
ATCTCCAACA GCGCGCCAGA TAGCGCATCC GTAGGCGGCA GCCTGACCGT TTACACTTGG
CTTATTTTCT TGGCTCTAGC GCTGATGAGT TTGCTACTGG GTAAAGCTTC CACCTTACTC
GGCATTCCTG CGCCTTATAT GTTGGCTGCG TTACTCATCA CCGCCAGCTT TAATGGCTTT
GCCACCGGCA TTGATATGCA AGTGCCGAAA TGGATGGTGA TATTCGCCAC CGCTTTACTC
GGCATTTTGA TCGGCTCACG CATTGCCGAT ACCACACTGC GCGAAGCCAT GGCGTATTCC
CGCGCAGGGG TAATGGTCAC CATGATTGGC CTTTTGGTCG CGGTGGGTGT CTCCGGTGTC
TTTTCTATTT TGATCGATAA ATCATGGGTC GTGCTGCTGC TTTCTTGGGT TCCCGGTAGT
GTAGAAGCCA TGACCGCTGT CGCCTTGTTA CTCGGCATGG AACCGGCGTT TGTGATGATT
AACCACGCTC TGCGCCTGTT GTTGCTCTAT TCACTGCCCG CCATGCTGAA AAAGCAGTTG
GAGGAGTTGA GGGGGAGATG A
|
|---|
| Protein sequence | MSERASFTLF IQILIIATVA AGAGTLLSIP LSEMFIASGL VIVLHKKRWL TIHTPPWLLL
FVQVVLGISV GATISLSELG TTLTLPVIVG LVCCLTLQII SSYLWLTKKE GWTPFESLLG
AVPGAMAAIL VISESSEKPS AKVVYSHSVR LMILTLLALL ISNSAPDSAS VGGSLTVYTW
LIFLALALMS LLLGKASTLL GIPAPYMLAA LLITASFNGF ATGIDMQVPK WMVIFATALL
GILIGSRIAD TTLREAMAYS RAGVMVTMIG LLVAVGVSGV FSILIDKSWV VLLLSWVPGS
VEAMTAVALL LGMEPAFVMI NHALRLLLLY SLPAMLKKQL EELRGR
|
|---|
| |