| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0500 |
|---|
| Symbol | |
|---|
| ID | 5133968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | + |
|---|
| Start bp | 557228 |
|---|
| End bp | 557965 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640530822 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_001215339 |
|---|
| Protein GI | 147672319 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00000138983 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCGAATC AATGGTGGGA CGAATGGGCG GAAAAATGTC ACTCGAAGGC CCACCGACAA
CTTTTATTTT GGAGATACCT TGTGAAACAG ACACTGCTTC TCGTTGAAGA TGATAAAAAC
CTCGCTGACG GTCTACTCGT CAGTTTAGAG CAAGCCGGTT ATGACTGTTT ACATGCAGAA
ACGATCGCAG ATGTGAAACA GCATTGGGAC AAGGCGGATC TCGTTATCCT TGATCGCCAA
CTGCCTGATG GTGATTCTGT ACAGCATCTA ATGGATTGGA AAAAAATTAA AGATATCCCA
GTGATTCTTT TAACTGCATT GGTCACAGTA AAAGACAAAG TGACTGGCCT TGATGCAGGC
GCAAACGACT ATCTCACTAA ACCTTTTGCA GAAGCTGAGC TGTTTGCACG TATCCGCGCA
CAGCTGCGCT CACCAGATAG TGGGCAAGAT GACAGTAAAG TGGTGACGTC TAACTTAACA
ATTGATAAAG CGACTCGTGA AGTTTTCTTC AATGGCGAAT CGATCACCCT AACTCGAACC
GAGTTTGATT TACTGCTCTT TTTAGCGAGT AATTTAGGCC GAGTATTTAC TCGCGATGAA
TTACTGGATC ACGTATGGGG ATATAACCAT TTCCCGACGA CGCGCACCGT AGATACTCAC
GTTTTGCAGC TGCGCCAAAA GTTGCCTGGG CTTGAAATTG AAACGCTACG CGGTGTTGGT
TACAAAATGA AAGCGTGA
|
|---|
| Protein sequence | MSNQWWDEWA EKCHSKAHRQ LLFWRYLVKQ TLLLVEDDKN LADGLLVSLE QAGYDCLHAE
TIADVKQHWD KADLVILDRQ LPDGDSVQHL MDWKKIKDIP VILLTALVTV KDKVTGLDAG
ANDYLTKPFA EAELFARIRA QLRSPDSGQD DSKVVTSNLT IDKATREVFF NGESITLTRT
EFDLLLFLAS NLGRVFTRDE LLDHVWGYNH FPTTRTVDTH VLQLRQKLPG LEIETLRGVG
YKMKA
|
|---|
| |