| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0493 |
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| Symbol | |
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| ID | 5134493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 550259 |
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| End bp | 551497 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640530816 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001215333 |
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| Protein GI | 147672041 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.0380455 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCTA GCTTTGTTAC TTCACCTTGG TTCCGTTTCG GTTTTCCTCT ATTGCTGCTG
GTAGCCATTT GGCTAGGCTT GAGCAATGTG GTATTGGTGA TAAAGTCTAA CTTAGGCATG
GCGGTCAACC TCCCCTACAT TCTCTTTTTG ATTGCGCTAA CCGTTGCTCA CATTTTTAAA
CAAAGCAGAA TCGCCATGGT AGCGATGACG ATGTTACTGG CTTACTGGTT GATCCAAATT
CGACTTCAAA CGCCTTTAAC CGTCAATTCC ACCATGCTTG AACTCATTAT GCTGAGCTTG
CTTTTGCCTG TGGCCTGTTT TTTACCTTAC GCCTACAAGA ATGCTGGATT ATTCAGCAAA
TCCTTTCTCA GTTACTTGGC TATTTTATTG CTGTTCATCT TTTGGGCTTG GCTGACCCAG
CTACACATAG GTGAAACAGA CCATTCCAGC CTCACCGAGG GAATATTTTT CGTTGTACCG
CAAATTTCTC GCTTACCCTT GGTGGTTGTT GCCTATCTTG TCGCACTCGC AGGTATTGCT
GCTATCTCGG TATTAACGCG CAATCAAATT CTTGATGTTG TGGTTTATAG TTCGATTGTA
TTGAGCATGA ATGCGTTTGT GCTGTTTCAT GTGCCTTATA TTTCCACCAT CATGTTTACC
TTATCTGGGC TGCTTATTCT GGTTTACCTC ATTTCCGCGG GCTATGAGAT GGCATTTAAC
GACCCACTCA CCCAAATTCC TGGTCGGCAA GCGCTTGATC AGGATTTAAA ACATATAGGT
CGAAAATTTA CCCTCGCTAT GCTCGATGTC GACCATTTCA AGAAGTTTAA CGATACTTAC
GGGCATGATA CGGGGGACGA TGTATTAAGA CTGGTTGCCT CTCGATTACG TGAAATCAAC
GGTAAAGCAC GAGTTTACCG CTATGGTGGT GAGGAGTTCT CGATTATTTA CAAAGGAAAA
TTGGCAAAGG AGGTTTTGCC TTTCATCGAG GCCTTACGGC AGGATATTGA GTCCTACGAG
TTGGTGATTC GTGACACCAA CCAGCGCCCG AAAAGTCATG CTGAAGGTGC AAAAAAACGC
AGCCGAAAAA GTAACAGTGA CATTGTCACT ATTACCATCA GCATTGGCGT GTGTGATTCT
GAGCTGTACC GCCATCCTAT TGAGGCACTC AAAGCAGCGG ATGGGGCACT TTATAAAGCG
AAGCAAGCTG GGCGCAATTG TGTCAAAGTC GCTAGCTAA
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| Protein sequence | MSSSFVTSPW FRFGFPLLLL VAIWLGLSNV VLVIKSNLGM AVNLPYILFL IALTVAHIFK
QSRIAMVAMT MLLAYWLIQI RLQTPLTVNS TMLELIMLSL LLPVACFLPY AYKNAGLFSK
SFLSYLAILL LFIFWAWLTQ LHIGETDHSS LTEGIFFVVP QISRLPLVVV AYLVALAGIA
AISVLTRNQI LDVVVYSSIV LSMNAFVLFH VPYISTIMFT LSGLLILVYL ISAGYEMAFN
DPLTQIPGRQ ALDQDLKHIG RKFTLAMLDV DHFKKFNDTY GHDTGDDVLR LVASRLREIN
GKARVYRYGG EEFSIIYKGK LAKEVLPFIE ALRQDIESYE LVIRDTNQRP KSHAEGAKKR
SRKSNSDIVT ITISIGVCDS ELYRHPIEAL KAADGALYKA KQAGRNCVKV AS
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