| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0454 |
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| Symbol | |
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| ID | 5134470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 504277 |
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| End bp | 507318 |
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| Gene Length | 3042 bp |
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| Protein Length | 1013 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640530777 |
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| Product | putative exonuclease SbcC |
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| Protein accession | YP_001215295 |
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| Protein GI | 147671875 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCCGT TAAAACTTAT CCTCCAAGCT TTCGGCCCTT TTGTTGGACG AGAAGAGATT
GACTTTACGA AGTTGGGTGA TGCTCCACTG TTTTTGATCA ATGGGGCAAC GGGAGCCGGA
AAAAGCTCGA TTCTGGATGC GATTTGCTAC GCCTTGTATG GCGAAACCAC GGGCAGTGAG
CGTACTGGCG ACCAAATGCG CTGCGATTAT GCGGATCCTG AGTCTCTCAC CGAAGTCAGT
TTTGAGTTTG AGCTGGCCGG GGCGCGTTAT CAAATCACCC GTCAGCCCGA TCAAGAGATC
CCGAAAAAAC GGGGTGAAGG GATGACGAAG AAATCCCATT CCGCTACTTT GGTTGCACTG
AAAGCGGATG GAAACGAGCT GATTGCCAAC AAGCCCAATC CTGTCGCGAA GGCGGTGATC
GAATTGATGG GACTTGATGT TAAGCAATTT CGCCAAGTCA TGGTGTTGCC TCAAGGCAAG
TTTCGTGAGC TTTTAACCGC CAATTCAAAA GAGCGTGAGC AGATTTTTGG TCAGCTCTTT
CAAACCCAGC TCTACAGCCA AATTGAACGG GCGCTGTTTG AGCGCGCCGC GGGTATTCGT
AAAGAGAAAG AAGAGTTTGA TCAGCAGATC AAAGGTACGT TAAGTGTCGT CGGACTGGAA
AGTGAAGAGC AGTTACAAAC CGAGTTGACC GAACTGGCCC CAGTATTAAC CCATGCGCAA
TCACAACTCA AAGCTGAGCA ACAGCAGTGG GATGAAACAA AAGCGCACTA TCAAGCTGCG
CTTGAGTTAG AACAACAATT TATCCGCAAG CAGCAATTGG TGGTAGAAAT CGCCACTCAC
CAAGAGCAGG CTTCGCACAT CGAAATGCTG CGCCAGCAAC GCCAGCAAGC CCAAAAAGCA
GCGCGTTTAA CCGCCGTCCA TCAACAGTGG CACCAAGCTC AAAAAAACCT ACTGCAAGCT
AAGCTTAAGG TTGAGCAGCA GCAGACTCTG TTGCAACAGG CGAAAGCTCA GCAGCAACAG
GCTCAACAGG TCAGTCAGCA AGCCAGTTTA GCCTGTGAAG AAGTACCAAA ATTAAACGAG
CAACGCATCA CGTGGCAGCG TGCTGAGCAA AAATTGCTGG CACAAGAAAA TGTTCAGCAA
GCGGTGGCCA AGGCTGAGCG TGAACTGCAA CTGGCGACAC AAAATGCGCT TAATTTGCAG
CATGCGAGCG AAAAGCTAGA GCAAGAGCTA CAAAACCAAC GACTCGAATG GGAACAGCAA
CAGCGCCAAT TAACGCGCTT AGAAGTTCAA AAAGCGCGAA TGAATCAGTT GGTGCAGCAA
GTTCAGGCTC GCGAGCGAGA ACAATCCCTA CTCAATGAAT TACAAACTGC TCAACAAGCT
TTATTGCGCT TTGAGCAGCA ACATCGGCAC ATCCAAACTC AGGCCGAACA AGCGAAACTG
ACCGCGGATA AACTGGAGTT TGCATGGCAT ACCCAGAGGG CTGCGGAGCT TGCTCTTGCA
CTCACACAAA ATGAACCTTG TCCGGTATGC GGCAGTTTAG AGCATCCCAA TAAAGCGCAA
TATTCGGGTG ACGTTGTCAC CAAGGTTCAG GTTGAAAAAG CCAGACAGCA GCAACAAGAT
TGGGTGCAGC GTCAGCAAGA GGCATTCCAT GCTTGGCAGC AACAAGGGTT TAAAACCGAG
CAGATAGCGC AAAATCTCAC GACTTTATCG AGTGAGCTAA CTTTGCAGCA AGTGGCGTTA
TTGAACGAGC TCATTGAACA GCAACAAATA CTGCACAGTG ATATTGCTGC GCTACAACAG
CTTAATCCTG ATTTGCTGAA ACGGCAGATT GAAGAGGGGG AGCAGCGGTT AGCGCACACC
AAAATGACGC TCGAAAAACA GAATCAAAAC CAGCAACAAG CTTGGCAGAC TTTGGCTCAG
TTACAGGCGG AATTGGCAAG TTTGCGCCAA GAAATCCCGC CGGAGCTGTC CAATCTTGAT
ACTTTACGAA GCGCGATCGG GCGTGTGCAG AACCAAATAG AAATCTTACA AAAAGCGGAA
CATACGGCTC GTGAACAGTG GGTGCAGGCG CAAAAGCAGT TTGCCAGTGT GCAGGCCGCT
CATCAGGCGG CGATTGAAGC GCACCGTGAG TCTCAGCGTC AGCAGGAGGA AACCACAAGC
GCATGGCAGC AAGGGTTACT CCATTCTGGA TTTAACGATG AGTCCGCCTA TCTTGCCGCT
CGTTTAACCG ATGAGGCTAT CGGCAATATC GAGCGCCAAA TCGCCCAGTA TGAAGAGCGC
AGTGCGATGC TCAGTGGCGA ACAGCAAGCC TTATCACGTA AATTAGCAGA GAAAAATCGC
CCAGAGCTGG AACCACTTCT TGTCAAAGTA ACTCAAGCTG AAGAAAAAAT GGAACTGGCG
TTGCAGGCGT TTACGCAACA TCAATCGCGG ATGGATGGAT TGCAACGTGT CGCCAAGCAA
CTGGCGGATC TTTACCAGAA AAATCGTGCA TTAGAAGCCG AATATCAGGT CGTGGGTACC
TTAAGTGATA TTGCGAATGG CAAAACGGGC GCTAAAGTCA GCTTACATCG CTTTGTGCTT
GGTGTTTTGC TGGATGATGT CTTGTTACAA GCTTCTCAAC GACTGATGAA AATGAGCCGA
GGCCGCTATT TACTCAAACG TAAAGAGGAA CGCGCTAAAG GTAATGTAGG CTCAGGGCTG
GATTTGATGG TCGAAGATAG CTACAGCGGT AAATGGCGTG ATGTGGCAAC CTTGTCCGGT
GGTGAATCGT TCATGGCCGC CTTATCGCTT GCGCTTGGTT TATCCGATGT GGTTCAGGCT
TACAGTGGTG GTATCCGTCT TGATACTCTG TTTATTGATG AAGGTTTTGG TAGTTTGGAT
CCGGAATCTT TAGATTTAGC GATCCAAACC CTAATCGATC TTCAGCAAGG TGGTCGAACG
ATAGGGATCA TCTCTCATGT TACCGAGCTG AAAGAGCAGA TCGGTCTAAG ATTGGATGTG
TTGGCGACAA GAATGGGTAG CACGCTGCGT TTAATCACAT AA
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| Protein sequence | MRPLKLILQA FGPFVGREEI DFTKLGDAPL FLINGATGAG KSSILDAICY ALYGETTGSE
RTGDQMRCDY ADPESLTEVS FEFELAGARY QITRQPDQEI PKKRGEGMTK KSHSATLVAL
KADGNELIAN KPNPVAKAVI ELMGLDVKQF RQVMVLPQGK FRELLTANSK EREQIFGQLF
QTQLYSQIER ALFERAAGIR KEKEEFDQQI KGTLSVVGLE SEEQLQTELT ELAPVLTHAQ
SQLKAEQQQW DETKAHYQAA LELEQQFIRK QQLVVEIATH QEQASHIEML RQQRQQAQKA
ARLTAVHQQW HQAQKNLLQA KLKVEQQQTL LQQAKAQQQQ AQQVSQQASL ACEEVPKLNE
QRITWQRAEQ KLLAQENVQQ AVAKAERELQ LATQNALNLQ HASEKLEQEL QNQRLEWEQQ
QRQLTRLEVQ KARMNQLVQQ VQAREREQSL LNELQTAQQA LLRFEQQHRH IQTQAEQAKL
TADKLEFAWH TQRAAELALA LTQNEPCPVC GSLEHPNKAQ YSGDVVTKVQ VEKARQQQQD
WVQRQQEAFH AWQQQGFKTE QIAQNLTTLS SELTLQQVAL LNELIEQQQI LHSDIAALQQ
LNPDLLKRQI EEGEQRLAHT KMTLEKQNQN QQQAWQTLAQ LQAELASLRQ EIPPELSNLD
TLRSAIGRVQ NQIEILQKAE HTAREQWVQA QKQFASVQAA HQAAIEAHRE SQRQQEETTS
AWQQGLLHSG FNDESAYLAA RLTDEAIGNI ERQIAQYEER SAMLSGEQQA LSRKLAEKNR
PELEPLLVKV TQAEEKMELA LQAFTQHQSR MDGLQRVAKQ LADLYQKNRA LEAEYQVVGT
LSDIANGKTG AKVSLHRFVL GVLLDDVLLQ ASQRLMKMSR GRYLLKRKEE RAKGNVGSGL
DLMVEDSYSG KWRDVATLSG GESFMAALSL ALGLSDVVQA YSGGIRLDTL FIDEGFGSLD
PESLDLAIQT LIDLQQGGRT IGIISHVTEL KEQIGLRLDV LATRMGSTLR LIT
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