| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0389 |
|---|
| Symbol | |
|---|
| ID | 5134507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | + |
|---|
| Start bp | 434219 |
|---|
| End bp | 435130 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640530712 |
|---|
| Product | GGDEF family protein |
|---|
| Protein accession | YP_001215230 |
|---|
| Protein GI | 147671442 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGACA AAGTGCTTGA GTCGGTTATT GAAATTACTG AGCAGAAAAA TTCGCTGGCA
CTCAGTTACA GTATTTTGGC GACCTTGTCT GAATTGTTAC CGCTCTCCAC GGCGACCTTA
TTTCACCATC TTGGACGTTC AACCCTTATG GTGGCACGTT TAATGATTAC CAAAAATGCT
GCAGGTAAAA AGGAGTACCA GTGGCAATAC GACCAAGTAT GTGCCGACAA TGGTTACCAG
CACTCTCAAT CGGAAATGGC GTTTTCCCAA CAAGTGAATG GCCAATATCA ATGCTTTTGC
CCGATTCCGA TAGAAGAACA CTTTTCCGCA GAGCTGTGCT TAATCCTCAA TAAAGATCCT
GAACCTTATC GTATGTTGAT CAACGGATTT GCGAAAATTT ACCGTAATTA CACGGTGATT
TTGCATGAGA GTGAACGCGA TAAGCTGACC GGATTACTCA ATCGTCGAAC GTTAGAAGAC
CGATTGCGCC ACACCTTTGC CATCAATCCC TCGACAGAAG AGAATCACAA ACTCTGGATC
GCGATGTTGG ATATTGACCA TTTTAAAGCG ATCAATGATC ACTTCGGACA CATGATTGGT
GATGAAATTC TGCTTATGTT CGCTCAGCAG ATGCAGCACT ATTTCGGACC GTCTTCTCAA
CTATTTCGCT TTGGTGGTGA AGAGTTCGTG ATTATTTTTT CAAGCGGTAA TGAGCCACAA
ATCAAGCAAC AGTTGGATGG CTTCCGTCAA CAGATCCGAC GCCATAACTT CCCGAGAATC
GGTGAACTGA GCTTCAGCGC TGGTTTTTGC TCACTCAGGC CGGGTGACTA TTTACCTACC
ATTCTCGACC ATGCCGATAA AGCGTTGTAT TACGCCAAAG AGCATGGCAC GAAATCAGGT
GCACTGCTAT GA
|
|---|
| Protein sequence | MNDKVLESVI EITEQKNSLA LSYSILATLS ELLPLSTATL FHHLGRSTLM VARLMITKNA
AGKKEYQWQY DQVCADNGYQ HSQSEMAFSQ QVNGQYQCFC PIPIEEHFSA ELCLILNKDP
EPYRMLINGF AKIYRNYTVI LHESERDKLT GLLNRRTLED RLRHTFAINP STEENHKLWI
AMLDIDHFKA INDHFGHMIG DEILLMFAQQ MQHYFGPSSQ LFRFGGEEFV IIFSSGNEPQ
IKQQLDGFRQ QIRRHNFPRI GELSFSAGFC SLRPGDYLPT ILDHADKALY YAKEHGTKSG
ALL
|
|---|
| |