| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0325 |
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| Symbol | exbD1 |
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| ID | 5134118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 357569 |
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| End bp | 357985 |
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| Gene Length | 417 bp |
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| Protein Length | 138 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640530648 |
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| Product | TonB system transport protein ExbD1 |
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| Protein accession | YP_001215166 |
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| Protein GI | 147672244 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0848] Biopolymer transport protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00000982985 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATCAAGT CCTCAGCCAA ACACAACGAC TTCGGCCTGA CTCCGGATCT CACCCCGCTA
CTTGATATCA TCTTTATCGT GATGGTGTTC TTGCTGCTGA CCGCGTCAGT ACGCTTGGAA
TCGTTGGAAG TGGCTCTGCC CACGACCGAT TCACCCGTAG TGAATGAAGT GAATAAAGAA
TCTATCACCG TCAATATCTT AGCCACCGAA CCTTATTGGG CAATTGATGG TAAGCCCTAC
CTCGACTGGC ATAACTTCTC GTTGGCGCTT TTAGAGTCTG TACAAGTGGA TAAGCGCCCG
GTAGTCATCG CCGCCGATCA AGGGGCTGAA GTTCAACAAT TAGTCAAACT GTTGAGCTTT
TTACAAGAAA ACGGCATTCA AGCCACCCAG TTATTAACTG AACCTTCTCA CTCTTAA
|
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| Protein sequence | MIKSSAKHND FGLTPDLTPL LDIIFIVMVF LLLTASVRLE SLEVALPTTD SPVVNEVNKE
SITVNILATE PYWAIDGKPY LDWHNFSLAL LESVQVDKRP VVIAADQGAE VQQLVKLLSF
LQENGIQATQ LLTEPSHS
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