Gene VC0395_0212 details

Gene Information

• Locus tag: VC0395_0212
• Symbol: glgX
• ID: 5134686
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009456
• Strand: -
• Start bp: 245695
• End bp: 247665
• Gene Length: 1971 bp
• Protein Length: 656 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640530535
• Product: glycogen operon protein GlgX
• Protein accession: YP_001215053
• Protein GI: 147671441
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases
• TIGRFAM ID: [TIGR02100] glycogen debranching enzyme GlgX

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0000000182326
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATGA ACCTGTCAAC GCCTTTCCCA TTAGGAGCAA CACTCGATGC AGAGGGTTGT 
AACTTTGCGA TTTATGCTCC AGCCAATCGA GATATTCTCT TGGCTCTCTT TCATGCTGAC 
GGTAGCTATG AAACACATCA GCTTGAACAT GAATATGCAG GGGTCAAACA TACGCATATT 
TCTGGCATTC ATGCTGGGCA GAAATACGGT TATTTAATCC AGCTCAATGA TGAATTGCAT 
TATATTTCTG ACCCTTACGC TCGAGCGTTA GAAGGGCCGC TGCATTATGC TCCGCCATTT 
GACAGCCATA AAAGTTTTGA TCTGCCAAAA TGTGTAGTCA CAGATACCCA CTTTGATTGG 
CAAAACGTGG CTAAGCCGCG TATCGCCCGA GATGAGATGG TGTTATTTGA AACCCATGTC 
AAAGGGTTAA CCCAATTAAA TCCGGATGTA GAAAAAGCCC TACGTGGCAA ATATTTAGGG 
TTGGTGAGCC AACCTATGCT GGATTTTTAT CGCCAGCAAA ATATTAATAC TCTGCAGCTA 
CTCCCAATTG CAGCTTGTAT GCATGAGCCC CATCTCTTGG AAAGTGGCAA GGTCAATTAT 
TGGGGTTATA ACCCTTATGT ATTTATGGCC CCCGATCCAC GTTACGCAAG TAAAGACGCC 
GTCAATGAAC TAAAAACCAC CATCCGTGAG CTGCATCGCA ACGGCATCCA AGTCATTTTG 
GATGTGGTGT ATAACCACAC TGCAGAAGGT GGAACCAATG GACCGGTGTT CAACCTCAAA 
GCCCTTGATC CAAACTACTA TCTGCACCAT GGCGATCACT ACGCCAACTA CACGGGATGT 
GGCAACACGG TCGATCTCTC CAACCAAGCG GCTCTGAATT TAGTGATGGA CACGCTTCGC 
TGTTGGGTAA CAGAATATCA GATTGACGGT TTTCGTTTCG ATTTAGCCGC CACCCTCGGC 
CGACGTGGTG ATGAGTTCAG CAAAGAAGCG GCCTTTTTCA AAGCCGTTGC ACAAGATCCG 
GTGCTGCGCG AAGTAAAGCT GATTGCCGAA CCTTGGGACA TTGGCCCCAA TGGCTACCAA 
GTGGGTAACT TTCCTTTTGG TTGGAATGAA ACCAACGACA AACTACGCGA TATTACCCGT 
AGCTTCTGGC GTGGCGACCT AGGCTTTTTG AAGGAGTTTG CAACACGCCT CATGGGTTCA 
CGCGACCTCT ACAGCGCGGC TAACTGGCCT TACAAACTGA CCGTCAACTA CATCACCTAT 
CACGATGGGT TTACGCTGCA AGATTTAGTG TCTTATAAAC ACAAACACAA CGAAGCGAAT 
GGCGAACAAA ACCGCGATGG CCATGGTGAT AACCGCTCAG ACAACTACGG TTTTGAAGGT 
GACACCGACA GTATCGTGAT CCGCGCGACT CGTGAGCGGC AGAAACGTAA CTTTATGGCT 
AGCCTGCTGT TTGCTTTCGG TATTCCACAC ATTCTCACCG CCGATGTGCT CTCACACACT 
CAAAAAGGCA ACAATAACGC TTACTGTCAA GACAACGACA TCAGCTGGTT AAACTGGGAA 
AACAACGAAA CCAAACAAGA TTTTCGTGAA TGGCTTGCCG GTATGGTAGC AGCAAGACAA 
ACCTACATGG TGCCCTTTAT TCGCGCATTT AGTGGCGAAA ACCGTAACAA TAACCGTATT 
GCTTGGCGTA GGGTGGATGG CAAACCTATG GAAATGGATG ACTGGAATCG CCTCTCCTCG 
GTCGCCTTGC ATATCGGCAT CGGTAGTGAT GGCCCTGAAA TGTTGTATTT GATTAATCAA 
ACCAACGCGC CAGCGCGCTT TGTGCTCCCT AAAGATAGGC AGCAGGATTG GCGTTTGATT 
TGCGATACCA ATATGCGCCA TGCTCAGCAT GGTCATGCTG AAGGTGAAGT GTTGCAACTG 
CCTGTTTCAA TGTCGATTCT GCACTATCAA CCAAAGAAAA AATCGGCTTA A 

 

Protein sequence

MKMNLSTPFP LGATLDAEGC NFAIYAPANR DILLALFHAD GSYETHQLEH EYAGVKHTHI 
SGIHAGQKYG YLIQLNDELH YISDPYARAL EGPLHYAPPF DSHKSFDLPK CVVTDTHFDW 
QNVAKPRIAR DEMVLFETHV KGLTQLNPDV EKALRGKYLG LVSQPMLDFY RQQNINTLQL 
LPIAACMHEP HLLESGKVNY WGYNPYVFMA PDPRYASKDA VNELKTTIRE LHRNGIQVIL 
DVVYNHTAEG GTNGPVFNLK ALDPNYYLHH GDHYANYTGC GNTVDLSNQA ALNLVMDTLR 
CWVTEYQIDG FRFDLAATLG RRGDEFSKEA AFFKAVAQDP VLREVKLIAE PWDIGPNGYQ 
VGNFPFGWNE TNDKLRDITR SFWRGDLGFL KEFATRLMGS RDLYSAANWP YKLTVNYITY 
HDGFTLQDLV SYKHKHNEAN GEQNRDGHGD NRSDNYGFEG DTDSIVIRAT RERQKRNFMA 
SLLFAFGIPH ILTADVLSHT QKGNNNAYCQ DNDISWLNWE NNETKQDFRE WLAGMVAARQ 
TYMVPFIRAF SGENRNNNRI AWRRVDGKPM EMDDWNRLSS VALHIGIGSD GPEMLYLINQ 
TNAPARFVLP KDRQQDWRLI CDTNMRHAQH GHAEGEVLQL PVSMSILHYQ PKKKSA