Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0113 |
Symbol | |
ID | 5134828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 126068 |
End bp | 129325 |
Gene Length | 3258 bp |
Protein Length | 1085 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640530436 |
Product | hypothetical protein |
Protein accession | YP_001214954 |
Protein GI | 147672111 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAATC CCAATCAAGC TGCGAAAACA GGACAGACCA ATGATGCGCA AAATCCCGCC AGTGCATGTC CTTTTAAACA GCCGTTAATA GGGATAATTC CTGTTCGTTA CGCCTTTGAT GTTTATGATG ATCAAGGTCA AGCATTACAT CCTTTACCCA AAGCGGATCG ACAGTGGAAA GGTCAATTCT CTATCAAGCA GCGCAGTTAC ACTTTAAGGC AACTGCGTGA TGGCTGGCTC TATGTCTATG ATGAAACAGC AAAAACACTG CACGAATATG AAGTCGTTGG CTGCAAGTTG ACCAAAATTG ATTGGTCTGA TGATGAGGCA AACAAACCCA CTCACGAGCG CGGTTCGAAA GGTGAAAGCA AAAGCTGTTT ACTCTATCCC GCCCAGCACA CGCTCTCTAT CGGTTATGCG CATCAACGAT GGACGTGGCG AGTGTGTGAG CATATGCGCT CCAATACCAG CAGCCGTCAT GCTGTGATGC GTAAAGTGAG CCTTAAACAG TTTGAGTCCA ATGGTACTCA CCCTCATGCA CATTTTGCTC AGTATCTTGA AGACTATGTG GCGGACATCG GGACGCCAGC TGAGCAGGAT ATTTTTAAAG ATACCTGTAC CCCTTCATTA CCGGTAGAGA AAAGTGAAGA AGCGGTGAAA GGTACGGAAT TCAAATTCGT TGCCGACAAA GCGGTGGTAA GCAGCAGTGA TTATTTGCAA GATTTGCCGG AGCAAAACTG CGGTTTATTT GTGGCGCTGA ATGACCCTTT AGCGGATGTG TCAGATTTAT TTGTTACTTT TACTACCCAA GTGGCAAAGC GAACTAAAGC GATTGGTGAT GAAACGCAAC AGCATAAAAT GCAGATGGCA GAGCTGACAC GCACATTAGG CCGAATTCGT CTTGAAGAAA AAGAAATTCC CGATTTTGTA AAACAAGATC CGATCCGTAT TTTAGAGCTA GAAAGAGCCA TTACTGAATA TTGTGCTACG GCAAAATTGG CCGAAATCGA ATCTCATCAT TTAGCCAGTG AAGGGCATTC CCCATCGGGA AACTATGCCT TGATGCAGCA GCAAGCGGAG CAGAAACTGG CGGAATTGAA AACACTCTAT CGCTTTGAAC CCACCAGTGC TCAGATGCGC AAGTGGCGCA AAAAAGACAA CAGCTTTATT GATGAAGTGC GTTGGGCGGA TTTAGATAAC TTTTTGGTGG AGCATTACAC CGAGCTCAAA GGATTGGATG AACAGATTAA ACAACACTAT GCGCAGTTTA TGTCTGCCTT CAACCAGCTC GGCCTTGACC CGCTTCTGTT TGGTATGGAT AACCAAGATG AGGTTCAGCA AGCGTATTTG TTAGCATTAA CTAGCCAATT TTTAGTGGTG GTTACGCAAG TCAATCATGA TGAAAAATCG CTTGAGATCC TAAAAAAAGA TCTCAGTTTT GATTCACCGA AAAACCTCAT GGCCCTCGCG TCAACAGGCT TTTCCCTGCA GGCAAATCAA GCCATTAACA ACCATATCCA AGGGTTTAGC ACCGCTTTTC TCTCTACAAG TAATCCTAGT GATATGGTGG CGTTTGCGAC CGCAATCGCT AACTGGGATA CGTTCACGGG GGATGAACGT ATTCAGGAGA AAGCATGGTT TAAGAGATGG ATTGAACCCG CTCAATCGAG TTTTGGTGCA CTGCAAAAAG CGGTCGCCAA TCAAGCCAAA GAGAGTTGGC AAGCGGTGAT GGAGTTGCTG TTTCCTTATC AGAATCAGCC CAAAGGAGGG ACGCCCAGTT TGTTGGCTAA CCTTCGTTTA CTGTTGGTGG AAAGCCTAGT TCGAGAAGAG GCGGTGCTGC AACATAACCC CAAGTATGCG GCTGAGCTTA AGCAATTTGA GACTAAGCTG AATGCCATTT TGCAAGAGAT GAATGATGCT CTGGAACTCA AACCCGGTAA TGTGAGCCCG AAAAACCATC AAATTGCGAC CGCGCAATCC GCACAACGTA AGCTAGGGCA ATTACTCAGT AGTGAGCTGC CGATGATGCT GACGCTCAAA AACCAAGCTG CGATGAACAC TTTTCAGCAG TCGGTAAATG AGAAACTGAG CGCGCTATCG AAAAACGTCA AAACCAGTAG CGCGTCGGTG AGTCAGAAAC TGGGTGGATT AGGGGGCTTG CTGTTTGCGT TGAACCTATG GAATACCATG ACGGTTTTGG AGAATATCCG CTATAAGGTC GCACAATACC CCAGTTGGAA TCCTTTTAAG AACCCGGCGT TGGGCGAAGC CATTTATGCC ACTGGCAACA CTATTGTAGT CGCCGGTGCC ATTAGTGCTG GGCGAGCTTG GGTGACGATT GCTGAGCAAG GGTTGTTAGA TCGTACACTG AAAAACGCCT TAAATACCAC GAAAGTTTTG GGCACAAAAG ATGCCCTAAA AACCTTTGCT AAATCGATCG CCTTGGTGGC TACCGTGGGC ATGATTGCCA GCGCATTAGA AACATGGGAA AGCTGGGGTA AGTTTAATGA CAGCAGTAAA ACCGATCTTG AACGCTTCGG TTATTTGTTA AAAGCTGGAG CAACGGGAGC ACAGGGAATT ATTTTTTATA TTCAGTTTTT CACACTCTTA GGTAGTGGAA TTGGTGGACC CTCCATAGCT GCGATTTCTG CAGGTTGGAT GCTCGCCGGT TTTGCTGTGA TTGGTATTGT CTATTTGATC GGGGTGATTT TGACCAATGT GTTTAAACGC TCAGAGTTAG AAATTTGGTT ATCAAAATCG ACGTGGGGGA AAGAGAGTGC TCATTGGCCA GTGGGCAAAG AATTGACCGA GTTAGAGCAC CTTCTCCATC GTCCGAGTCT TCGGTTGAGT CAAGTTACGC AACGTAAAGC AGCGCAATGG ATGGATTCAG GTTCTTTACA ATGGCAGTTG GAACTCACGT TACCCGATTA TCTTAAGGGG CAGACGATAG GCTTACAAAT CACCCGTTTG CCAGCGCAGC CGGCATATTA TCAACCGCAA AGGGAGGCGG TAACACCAAT ACTCATCAAT GAACAACAGG GCAAATGGAG TATTGAAGAT AATCAGCCAG TGTATCGTAT TACACTGGGT GGCAGTGAGA AGGATACTGT CGGAGTTTGC GTTGCACTGC CCCTGCGTTG GGGCAAGGAG CTGAGCCTCA AATTCTATGC CAGTGGAACT CGCGCGGGGG AATTGGATTT ACAATCTGCA GAGGCGAATG ATATTGCCAC AAGAAATCTC GTTGTAGGAA AAGGTTAA
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Protein sequence | MSNPNQAAKT GQTNDAQNPA SACPFKQPLI GIIPVRYAFD VYDDQGQALH PLPKADRQWK GQFSIKQRSY TLRQLRDGWL YVYDETAKTL HEYEVVGCKL TKIDWSDDEA NKPTHERGSK GESKSCLLYP AQHTLSIGYA HQRWTWRVCE HMRSNTSSRH AVMRKVSLKQ FESNGTHPHA HFAQYLEDYV ADIGTPAEQD IFKDTCTPSL PVEKSEEAVK GTEFKFVADK AVVSSSDYLQ DLPEQNCGLF VALNDPLADV SDLFVTFTTQ VAKRTKAIGD ETQQHKMQMA ELTRTLGRIR LEEKEIPDFV KQDPIRILEL ERAITEYCAT AKLAEIESHH LASEGHSPSG NYALMQQQAE QKLAELKTLY RFEPTSAQMR KWRKKDNSFI DEVRWADLDN FLVEHYTELK GLDEQIKQHY AQFMSAFNQL GLDPLLFGMD NQDEVQQAYL LALTSQFLVV VTQVNHDEKS LEILKKDLSF DSPKNLMALA STGFSLQANQ AINNHIQGFS TAFLSTSNPS DMVAFATAIA NWDTFTGDER IQEKAWFKRW IEPAQSSFGA LQKAVANQAK ESWQAVMELL FPYQNQPKGG TPSLLANLRL LLVESLVREE AVLQHNPKYA AELKQFETKL NAILQEMNDA LELKPGNVSP KNHQIATAQS AQRKLGQLLS SELPMMLTLK NQAAMNTFQQ SVNEKLSALS KNVKTSSASV SQKLGGLGGL LFALNLWNTM TVLENIRYKV AQYPSWNPFK NPALGEAIYA TGNTIVVAGA ISAGRAWVTI AEQGLLDRTL KNALNTTKVL GTKDALKTFA KSIALVATVG MIASALETWE SWGKFNDSSK TDLERFGYLL KAGATGAQGI IFYIQFFTLL GSGIGGPSIA AISAGWMLAG FAVIGIVYLI GVILTNVFKR SELEIWLSKS TWGKESAHWP VGKELTELEH LLHRPSLRLS QVTQRKAAQW MDSGSLQWQL ELTLPDYLKG QTIGLQITRL PAQPAYYQPQ REAVTPILIN EQQGKWSIED NQPVYRITLG GSEKDTVGVC VALPLRWGKE LSLKFYASGT RAGELDLQSA EANDIATRNL VVGKG
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