Gene VC0395_0113 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0113 
Symbol 
ID5134828 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp126068 
End bp129325 
Gene Length3258 bp 
Protein Length1085 aa 
Translation table11 
GC content46% 
IMG OID640530436 
Producthypothetical protein 
Protein accessionYP_001214954 
Protein GI147672111 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAATC CCAATCAAGC TGCGAAAACA GGACAGACCA ATGATGCGCA AAATCCCGCC 
AGTGCATGTC CTTTTAAACA GCCGTTAATA GGGATAATTC CTGTTCGTTA CGCCTTTGAT
GTTTATGATG ATCAAGGTCA AGCATTACAT CCTTTACCCA AAGCGGATCG ACAGTGGAAA
GGTCAATTCT CTATCAAGCA GCGCAGTTAC ACTTTAAGGC AACTGCGTGA TGGCTGGCTC
TATGTCTATG ATGAAACAGC AAAAACACTG CACGAATATG AAGTCGTTGG CTGCAAGTTG
ACCAAAATTG ATTGGTCTGA TGATGAGGCA AACAAACCCA CTCACGAGCG CGGTTCGAAA
GGTGAAAGCA AAAGCTGTTT ACTCTATCCC GCCCAGCACA CGCTCTCTAT CGGTTATGCG
CATCAACGAT GGACGTGGCG AGTGTGTGAG CATATGCGCT CCAATACCAG CAGCCGTCAT
GCTGTGATGC GTAAAGTGAG CCTTAAACAG TTTGAGTCCA ATGGTACTCA CCCTCATGCA
CATTTTGCTC AGTATCTTGA AGACTATGTG GCGGACATCG GGACGCCAGC TGAGCAGGAT
ATTTTTAAAG ATACCTGTAC CCCTTCATTA CCGGTAGAGA AAAGTGAAGA AGCGGTGAAA
GGTACGGAAT TCAAATTCGT TGCCGACAAA GCGGTGGTAA GCAGCAGTGA TTATTTGCAA
GATTTGCCGG AGCAAAACTG CGGTTTATTT GTGGCGCTGA ATGACCCTTT AGCGGATGTG
TCAGATTTAT TTGTTACTTT TACTACCCAA GTGGCAAAGC GAACTAAAGC GATTGGTGAT
GAAACGCAAC AGCATAAAAT GCAGATGGCA GAGCTGACAC GCACATTAGG CCGAATTCGT
CTTGAAGAAA AAGAAATTCC CGATTTTGTA AAACAAGATC CGATCCGTAT TTTAGAGCTA
GAAAGAGCCA TTACTGAATA TTGTGCTACG GCAAAATTGG CCGAAATCGA ATCTCATCAT
TTAGCCAGTG AAGGGCATTC CCCATCGGGA AACTATGCCT TGATGCAGCA GCAAGCGGAG
CAGAAACTGG CGGAATTGAA AACACTCTAT CGCTTTGAAC CCACCAGTGC TCAGATGCGC
AAGTGGCGCA AAAAAGACAA CAGCTTTATT GATGAAGTGC GTTGGGCGGA TTTAGATAAC
TTTTTGGTGG AGCATTACAC CGAGCTCAAA GGATTGGATG AACAGATTAA ACAACACTAT
GCGCAGTTTA TGTCTGCCTT CAACCAGCTC GGCCTTGACC CGCTTCTGTT TGGTATGGAT
AACCAAGATG AGGTTCAGCA AGCGTATTTG TTAGCATTAA CTAGCCAATT TTTAGTGGTG
GTTACGCAAG TCAATCATGA TGAAAAATCG CTTGAGATCC TAAAAAAAGA TCTCAGTTTT
GATTCACCGA AAAACCTCAT GGCCCTCGCG TCAACAGGCT TTTCCCTGCA GGCAAATCAA
GCCATTAACA ACCATATCCA AGGGTTTAGC ACCGCTTTTC TCTCTACAAG TAATCCTAGT
GATATGGTGG CGTTTGCGAC CGCAATCGCT AACTGGGATA CGTTCACGGG GGATGAACGT
ATTCAGGAGA AAGCATGGTT TAAGAGATGG ATTGAACCCG CTCAATCGAG TTTTGGTGCA
CTGCAAAAAG CGGTCGCCAA TCAAGCCAAA GAGAGTTGGC AAGCGGTGAT GGAGTTGCTG
TTTCCTTATC AGAATCAGCC CAAAGGAGGG ACGCCCAGTT TGTTGGCTAA CCTTCGTTTA
CTGTTGGTGG AAAGCCTAGT TCGAGAAGAG GCGGTGCTGC AACATAACCC CAAGTATGCG
GCTGAGCTTA AGCAATTTGA GACTAAGCTG AATGCCATTT TGCAAGAGAT GAATGATGCT
CTGGAACTCA AACCCGGTAA TGTGAGCCCG AAAAACCATC AAATTGCGAC CGCGCAATCC
GCACAACGTA AGCTAGGGCA ATTACTCAGT AGTGAGCTGC CGATGATGCT GACGCTCAAA
AACCAAGCTG CGATGAACAC TTTTCAGCAG TCGGTAAATG AGAAACTGAG CGCGCTATCG
AAAAACGTCA AAACCAGTAG CGCGTCGGTG AGTCAGAAAC TGGGTGGATT AGGGGGCTTG
CTGTTTGCGT TGAACCTATG GAATACCATG ACGGTTTTGG AGAATATCCG CTATAAGGTC
GCACAATACC CCAGTTGGAA TCCTTTTAAG AACCCGGCGT TGGGCGAAGC CATTTATGCC
ACTGGCAACA CTATTGTAGT CGCCGGTGCC ATTAGTGCTG GGCGAGCTTG GGTGACGATT
GCTGAGCAAG GGTTGTTAGA TCGTACACTG AAAAACGCCT TAAATACCAC GAAAGTTTTG
GGCACAAAAG ATGCCCTAAA AACCTTTGCT AAATCGATCG CCTTGGTGGC TACCGTGGGC
ATGATTGCCA GCGCATTAGA AACATGGGAA AGCTGGGGTA AGTTTAATGA CAGCAGTAAA
ACCGATCTTG AACGCTTCGG TTATTTGTTA AAAGCTGGAG CAACGGGAGC ACAGGGAATT
ATTTTTTATA TTCAGTTTTT CACACTCTTA GGTAGTGGAA TTGGTGGACC CTCCATAGCT
GCGATTTCTG CAGGTTGGAT GCTCGCCGGT TTTGCTGTGA TTGGTATTGT CTATTTGATC
GGGGTGATTT TGACCAATGT GTTTAAACGC TCAGAGTTAG AAATTTGGTT ATCAAAATCG
ACGTGGGGGA AAGAGAGTGC TCATTGGCCA GTGGGCAAAG AATTGACCGA GTTAGAGCAC
CTTCTCCATC GTCCGAGTCT TCGGTTGAGT CAAGTTACGC AACGTAAAGC AGCGCAATGG
ATGGATTCAG GTTCTTTACA ATGGCAGTTG GAACTCACGT TACCCGATTA TCTTAAGGGG
CAGACGATAG GCTTACAAAT CACCCGTTTG CCAGCGCAGC CGGCATATTA TCAACCGCAA
AGGGAGGCGG TAACACCAAT ACTCATCAAT GAACAACAGG GCAAATGGAG TATTGAAGAT
AATCAGCCAG TGTATCGTAT TACACTGGGT GGCAGTGAGA AGGATACTGT CGGAGTTTGC
GTTGCACTGC CCCTGCGTTG GGGCAAGGAG CTGAGCCTCA AATTCTATGC CAGTGGAACT
CGCGCGGGGG AATTGGATTT ACAATCTGCA GAGGCGAATG ATATTGCCAC AAGAAATCTC
GTTGTAGGAA AAGGTTAA
 
Protein sequence
MSNPNQAAKT GQTNDAQNPA SACPFKQPLI GIIPVRYAFD VYDDQGQALH PLPKADRQWK 
GQFSIKQRSY TLRQLRDGWL YVYDETAKTL HEYEVVGCKL TKIDWSDDEA NKPTHERGSK
GESKSCLLYP AQHTLSIGYA HQRWTWRVCE HMRSNTSSRH AVMRKVSLKQ FESNGTHPHA
HFAQYLEDYV ADIGTPAEQD IFKDTCTPSL PVEKSEEAVK GTEFKFVADK AVVSSSDYLQ
DLPEQNCGLF VALNDPLADV SDLFVTFTTQ VAKRTKAIGD ETQQHKMQMA ELTRTLGRIR
LEEKEIPDFV KQDPIRILEL ERAITEYCAT AKLAEIESHH LASEGHSPSG NYALMQQQAE
QKLAELKTLY RFEPTSAQMR KWRKKDNSFI DEVRWADLDN FLVEHYTELK GLDEQIKQHY
AQFMSAFNQL GLDPLLFGMD NQDEVQQAYL LALTSQFLVV VTQVNHDEKS LEILKKDLSF
DSPKNLMALA STGFSLQANQ AINNHIQGFS TAFLSTSNPS DMVAFATAIA NWDTFTGDER
IQEKAWFKRW IEPAQSSFGA LQKAVANQAK ESWQAVMELL FPYQNQPKGG TPSLLANLRL
LLVESLVREE AVLQHNPKYA AELKQFETKL NAILQEMNDA LELKPGNVSP KNHQIATAQS
AQRKLGQLLS SELPMMLTLK NQAAMNTFQQ SVNEKLSALS KNVKTSSASV SQKLGGLGGL
LFALNLWNTM TVLENIRYKV AQYPSWNPFK NPALGEAIYA TGNTIVVAGA ISAGRAWVTI
AEQGLLDRTL KNALNTTKVL GTKDALKTFA KSIALVATVG MIASALETWE SWGKFNDSSK
TDLERFGYLL KAGATGAQGI IFYIQFFTLL GSGIGGPSIA AISAGWMLAG FAVIGIVYLI
GVILTNVFKR SELEIWLSKS TWGKESAHWP VGKELTELEH LLHRPSLRLS QVTQRKAAQW
MDSGSLQWQL ELTLPDYLKG QTIGLQITRL PAQPAYYQPQ REAVTPILIN EQQGKWSIED
NQPVYRITLG GSEKDTVGVC VALPLRWGKE LSLKFYASGT RAGELDLQSA EANDIATRNL
VVGKG