| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0105 |
|---|
| Symbol | |
|---|
| ID | 5134655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 116028 |
|---|
| End bp | 116762 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640530428 |
|---|
| Product | putative transcriptional regulator |
|---|
| Protein accession | YP_001214946 |
|---|
| Protein GI | 147672388 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 61 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAA CAAAGATTTC AGCAAACCAA GTTAATGAAA AATCACTGCA ATTGCTGATG
CAAGTCGCAG TAAACCCAGA ACCAGTCTCT GCAAAAGGAC TCAGTGAACA ACTGCAAGTA
CCGCTCAGTA GCCTGTATCG ACATTTGAAG CTGCTGAAAG AGTGGAACTT GATTGAAGAG
AGCCCGCACG ACAAAACCTT GATCATCGGT CCAGCGGCAT TGCTGCTGAT GAGAAGTTAC
GAAACCAGCC AACATAACCT CGATGCGGTT GAAGCTGTGT TAAGTCGTCT ACAAAAACAG
ACTGGGGAAA TGGCCGCGTA TATGGTGCCT GTCGGTTATC GAGCCCTATG CGTTAGCCAA
AGAGAAAGTA TGCAGGCGCT TCGATGCAGC TTCGTCCAGG GTCAAAGTCA ACCACTGCTT
CGAGGTGCCT CATCTAAAGT AATGTTGGCG TACATGCCTG CAGCTCGTTG TGAAAAGATC
CTGCGTTATT TTGGCGAAGA TCCGACGTTA GACAAGTGGC AGAGCGAGTT TGAAAAAATA
CGTCGTCATG GATATGCCGT GAGTACCTCT GAAATTGATC CCGGTGTTTC GGGGATCAGT
GCTCCGGTGA TGAAAGGGAG TAAGTTGATT GGTGCAATTT CGGTGATGGC TCCAGCCCAC
CGAGTCGAAA GCAACAAGCA ACGGATAATT TTACATGTAT TGCAAGCCGC ACGGGCGTTG
CCACCAGAAA GGTAA
|
|---|
| Protein sequence | MNETKISANQ VNEKSLQLLM QVAVNPEPVS AKGLSEQLQV PLSSLYRHLK LLKEWNLIEE
SPHDKTLIIG PAALLLMRSY ETSQHNLDAV EAVLSRLQKQ TGEMAAYMVP VGYRALCVSQ
RESMQALRCS FVQGQSQPLL RGASSKVMLA YMPAARCEKI LRYFGEDPTL DKWQSEFEKI
RRHGYAVSTS EIDPGVSGIS APVMKGSKLI GAISVMAPAH RVESNKQRII LHVLQAARAL
PPER
|
|---|
| |