| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0103 |
|---|
| Symbol | |
|---|
| ID | 5134854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | + |
|---|
| Start bp | 113499 |
|---|
| End bp | 115064 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640530426 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | YP_001214944 |
|---|
| Protein GI | 147672507 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTAA GCATTAGTCG TATTCTTTTG CTGAGTGTTT CTATTCTTTG CACCCTTGCG
CTGTTGTCCC TGACTTATTT GACTTGGACG AAAAGCGTAA AAGAGATGAA CACCATCAGT
GCTGAAACTT TCGAGAAAAC GTCACTTTCT CTGGCTGATA ATATTGCGAC TGCCGTTCGT
TTTAATAAAA CCAGCGCAAT TTCGGAGCGG GTGGCCATTG AACTCAACGC AAATCCAGTT
CAACTCAAAA ATGTGTATAC CTTCAACGCC AAGGGGCAAG TGCTGTATAA CGCCAAAAAT
ACTAGCGATA CGGCCACCAG CCTGAATCAA TGGGTAACTC AACCACCGTC CGATCAAGCT
GTTCGCAAAA ATACCGATGG CCATGAAGGG CTCCTAATTA TCGTGCCGCT CAAAGCTGGG
AAAAATGCAG ATTTAGTCGG CTATCTCGTT ACAGAATGGG GGTTCGATCA AGTTCAACAA
GTCGCATCAC AATTACGCAA TCAAGCGTTT ATGCTCAGTA TTGGCTTTCT CTTAGTGACC
TTAATAGCCA TTTACTGGCT ATTACAACGT ACATTGATCG CACCTTTAAA TGATTTAAAG
GTGCTTTGTC ATGCTCTGGC AAGCGGTAGT TGTGACCTAA GCTCACGAAT CAACTTTCGT
AAGGACAATG AGCTCGGTCA ACTGGCTAAT GCCATTGATG ATTTTATCGC AAAAGTGGAA
AGCACCTTTG CACCTATCAA AGACCGAATC GTGGAAGTCA CGGATGTCAG CCACAAAGTT
GAGCAACAAA TTGGTCGTTT AGAGCACAAC ATACATAATC AACAGAGTGA AATTTCCAAT
TCAGTCGCTA TCGGTCATCA AAGCCAAGAC AGCATCAAAG CGGTGACAGA GAGTATTTAT
GCCGCCTCCG AGTCTTTAAA ACAGGCTGTC ACCAGCAGTG AAGACAGCAA AGCTCAGCTC
CGCGAGGCGC AAACCCAAAA TCAACAACTG GTCGAAAAAG CAGAAATCAC CACAAAAACC
GCGACAGAAT TGAATACACA AGTCGAAAAA GTGACCGATA TCTTACAAAT GATCCGCAGT
ATCGCCGAGC AAACCAACCT TTTGGCACTG AATGCCGCCA TTGAGGCAGC CAGAGCAGGA
GAAAATGGCC GCGGTTTTGC CGTCGTAGCC GATGAGGTGC GCCACTTGGC TGAAAAAACG
TCCGCTTCAA CCAATCAAGT TGAAACGCTA TTAACTCAGC TCTCGGGTTA CTCAAGAAAC
CTGATTGGCT ACATGGAAGA GAGCTTGGTA GCGGCGAGAA ATTGCGTAGC GGCGATTGAA
AGCGGTTCAA ATTTGGTCGA TAAAGCGATT ATCGATGTTA ATCAAGCCAA TAGCACCAAC
CAAAATGCAG TGCATGATAG CGAGCAGCAG AATCGTTTAG TTGAACAACT GCTCGAGCAA
CTGCGTTTGT TGGACAACCA TGCCCGTGAA CTATTAACGG ATAGCGCAAC GATAAGTGAG
CACAGTAAAG AGCTACTCCG CTCCGCAAGC CAGACCCGCA GTAACCTCAA GCAACTTTCA
CATTAA
|
|---|
| Protein sequence | MKLSISRILL LSVSILCTLA LLSLTYLTWT KSVKEMNTIS AETFEKTSLS LADNIATAVR
FNKTSAISER VAIELNANPV QLKNVYTFNA KGQVLYNAKN TSDTATSLNQ WVTQPPSDQA
VRKNTDGHEG LLIIVPLKAG KNADLVGYLV TEWGFDQVQQ VASQLRNQAF MLSIGFLLVT
LIAIYWLLQR TLIAPLNDLK VLCHALASGS CDLSSRINFR KDNELGQLAN AIDDFIAKVE
STFAPIKDRI VEVTDVSHKV EQQIGRLEHN IHNQQSEISN SVAIGHQSQD SIKAVTESIY
AASESLKQAV TSSEDSKAQL REAQTQNQQL VEKAEITTKT ATELNTQVEK VTDILQMIRS
IAEQTNLLAL NAAIEAARAG ENGRGFAVVA DEVRHLAEKT SASTNQVETL LTQLSGYSRN
LIGYMEESLV AARNCVAAIE SGSNLVDKAI IDVNQANSTN QNAVHDSEQQ NRLVEQLLEQ
LRLLDNHARE LLTDSATISE HSKELLRSAS QTRSNLKQLS H
|
|---|
| |