| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0847 |
|---|
| Symbol | |
|---|
| ID | 5131305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 834960 |
|---|
| End bp | 836510 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640529763 |
|---|
| Product | reductive dehalogenase |
|---|
| Protein accession | YP_001214307 |
|---|
| Protein GI | 147669489 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1143] Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02486] reductive dehalogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATAATT TCCATTGTAC GATAAGTAGG CGAGATTTTA TGAAGGGATT GGGGTTAGCG
GGAGCAGGGA TAGGTGCCGC GACTTCAGTT ATGCCGAATT TTCACGACTT GGATGAAGTA
ATTTCTGCTG CTAGTGCCGA AACCAGTTCT TTGTCGGGTA AATCTCTTAA TAATTTTCCT
TGGTATGTGA AAGAAAGGGA TTTTGAAAAT CCTACCATTG ATATAGATTG GTCTATACTT
GCGCGTAATG ACGGTTACAA TCATCAGGGA GCCTATTGGG GACCTGTACC TGAAAATGGA
GATGATAAAA GGTATCCTGA TCCCGCGGAC CAGTGTCTTA CTCTACCAGA AAAGAGAGAT
CTTTATTTAG CGTGGGCAAA ACAGCAATTT CCTGACTGGG AACCAGGAAT TAATGGCCAT
GGGCCAACAA GGGACGAAGC TTTATGGTTT GCCTCAAGTA CAGGTGGTAT CGGTAGGTAT
AGAATTCCTG GTACCCAGCA AATGATGTCC ACAATGCGTC TTGACGGGTC TACTGGTGGT
TGGGGTTATT TCAATCAACC ACCGGCAGCA GTCTGGGGAG GGAAATACCC AAGGTGGGAA
GGAACTCCTG AAGAAAATAC GTTGATGATG CGAACTGTTT GTCAATTTTT TGGTTACTCC
AGTATAGGTG TAATGCCAAT CACCAGCAAT ACAAAGAAGC TTTTTTTTGA AAAGCAAATA
CCTTTCCAAT TTATGGCTGG AGATCCCGGT GTATTTGGGG GAACGGGAAA TGTGCAGTTT
GATGTCCCGC TGCCAAAGAC ACCTGTTCCA ATAGTCTGGG AGGAAGTCGA TAAAGGGTAT
TATAATGACC AGAAAATTGT AATACCCAAT AAGGCTAACT GGGTATTAAC AATGACAATG
CCTTTACCAG AAGATCGTTT TAAACGTTCT CTAGGGTGGT CACTTGACGC TTCAAGTATG
ATTGCCTATC CTCAGATGGC TTTTAATGGA GGCCGAGTTC AGACTTTTTT AAAAGCACTT
GGCTATCAAG GACTTGGTGG CGACGTGGCT ATGTGGGGAC CTGGTGGTGC TTTTGGAGTT
ATGAGTGGTC TTTCCGAACA AGGTCGTGCT GCTAATGAAA TCAGCCCCAA ATACGGTTCG
GCAACTAAGG GCTCTAATCG ATTAGTTTGT GATTTGCCCA TGGTTCCGAC CAAGCCAATT
GATGCTGGCA TACACAAATT CTGTGAAACG TGTGGCATTT GTACAACAGT TTGTCCCTCA
AATGCTATCC AGGTAGGTCC TCCACAATGG AGTAATAATC GGTGGGATAA TACCCCTGGT
TATCTTGGTT ATCGACTTAA CTGGGGTAGA TGTGTTCTTT GTACAAACTG TGAGACCTAT
TGCCCATTTT TTAACATGAC TAATGGTTCT TTGATTCATA ACGTAGTCAG ATCCACAGTT
GCAGCTACAC CGGTTTTTAA TTCATTTTTC CGCCAAATGG AACATACATT TGGATATGGT
ATGAAAGATG ATTTAAACGA TTGGTGGAAT CAATCACACA AGCCTTGGTA A
|
|---|
| Protein sequence | MHNFHCTISR RDFMKGLGLA GAGIGAATSV MPNFHDLDEV ISAASAETSS LSGKSLNNFP
WYVKERDFEN PTIDIDWSIL ARNDGYNHQG AYWGPVPENG DDKRYPDPAD QCLTLPEKRD
LYLAWAKQQF PDWEPGINGH GPTRDEALWF ASSTGGIGRY RIPGTQQMMS TMRLDGSTGG
WGYFNQPPAA VWGGKYPRWE GTPEENTLMM RTVCQFFGYS SIGVMPITSN TKKLFFEKQI
PFQFMAGDPG VFGGTGNVQF DVPLPKTPVP IVWEEVDKGY YNDQKIVIPN KANWVLTMTM
PLPEDRFKRS LGWSLDASSM IAYPQMAFNG GRVQTFLKAL GYQGLGGDVA MWGPGGAFGV
MSGLSEQGRA ANEISPKYGS ATKGSNRLVC DLPMVPTKPI DAGIHKFCET CGICTTVCPS
NAIQVGPPQW SNNRWDNTPG YLGYRLNWGR CVLCTNCETY CPFFNMTNGS LIHNVVRSTV
AATPVFNSFF RQMEHTFGYG MKDDLNDWWN QSHKPW
|
|---|
| |