| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0390 |
|---|
| Symbol | |
|---|
| ID | 5131044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 395942 |
|---|
| End bp | 396709 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640529291 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001213853 |
|---|
| Protein GI | 147669035 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | [TIGR01291] ABC-2 type transporter, NodJ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTGGC CTACTTACCG TGCCTTTTAT ATGTGGCTCA GGAACTACAA CGTTTTTATC
CGTTTGTTCT GGTCTATAGC GCCGGGGTTT GTTATTGAGC CGGTAGTGCT TCTGGTAGCG
CTGGGTTTTG GTTTCGGGTC ATTTATCGGG GATATAAACG GCCAGCCCTA TATGGAGTTT
ATTATACCGG GTGTTATTGC CAGTTATGCC ATGACCAGTG CTACTTTTGA GTGCACATAT
AACGTCTTTT TCCGTATGGA TTACCGGAAA ACCTATGATT CCATACTGGC TACCCCTATG
AACGTGAGTG ATGTTGTTAC CGGTGAGGTT TTATGGGGAG CCACCCGTTC CATCATAACA
GCCTGCATTA TTCTGCTGGT TGCGGCTTTA TTCGGTATTA TCCATTCACC GTGGGCACTG
CTGGCACCCA TATTTGCGGT GCTTGAGGGC ATTATGTTTG CCAGTATCGG CATTTTCTTT
GCTTCCATAG TACCTTCCAT ATACAGCTTC AATTATTATT TTACTTTGTT TATCGGTCCC
ATGACTTTTT TCAGCGGGGC TTTTTTCCCT GTATCCAGCT TTCCGGAAGC GGTTCAGGCT
ATTTCGAATG TCGTACCCCT TACTCCGGCG GTCAGCCTTA TTCGGGGAGC GGTTAGCGGT
GACTTTAGCG GGGTAAATGT GGTAATCTCG TTGCTGGCGG TTATAGGGGT ATCGGCGGCT
TTTTATATAG CCACTCTTTT TAGTATGAAA CGCCGGGTTA TGGAATAA
|
|---|
| Protein sequence | MNWPTYRAFY MWLRNYNVFI RLFWSIAPGF VIEPVVLLVA LGFGFGSFIG DINGQPYMEF
IIPGVIASYA MTSATFECTY NVFFRMDYRK TYDSILATPM NVSDVVTGEV LWGATRSIIT
ACIILLVAAL FGIIHSPWAL LAPIFAVLEG IMFASIGIFF ASIVPSIYSF NYYFTLFIGP
MTFFSGAFFP VSSFPEAVQA ISNVVPLTPA VSLIRGAVSG DFSGVNVVIS LLAVIGVSAA
FYIATLFSMK RRVME
|
|---|
| |