| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0355 |
|---|
| Symbol | |
|---|
| ID | 5131585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 363419 |
|---|
| End bp | 364129 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640529255 |
|---|
| Product | undecaprenyl diphosphate synthase |
|---|
| Protein accession | YP_001213818 |
|---|
| Protein GI | 147669000 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.580646 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGACACAA CAGCTACAAT AAATAATACT CCCCCTGACC ACATAGCCAT AATAATGGAT
GGAAACGGCC GCTGGGCAGA ACGCCGCGGC CTTAGCCGTT TAGAGGGGCA CAAAGCCGGT
CTGGAAAACG CCAGACGGGT TATCCGCCAC TTGAGTTCGC TGGGGGTCAA ATATGTCACC
CTCTACAGTT TTTCCACTGA AAACTGGAAA CGCCCCGATG CTGAAATAAA AGGGCTTTTC
GGTCTGATAA ATGATGTTAT TTCATCTTAT ATCCCGGAGC TTGCGGGAAA TAACATCCGT
TTGCGGCATC TGGGACATCT GGATAAACTG CCCGCTATGC TCAAGCATAA ACTGGAGAGT
TTACTCTCCG AAACCAGCCA AAATAGCGGC CTGACCCTCT CGCTGGCTTT TGACTACGGC
GGGCGTGATG AAATTATTCA GGCGGTAAAA AAGCTGGTTA AAGACGGGAT AGAACCTGAT
AAAATAAGCG AAGAGCTTTT TGCTGGATAC CTGTTTACCA CAGGCATACC TGAAGCAGGC
CTGATTATCC GCACCGGCGG CGAAATACGG CTTTCCAATT TTCTCCTGTG GCAATCTGCC
TACAGCGAGC TGTATTTTTC GGAAGTAATG TGGCCAGACT TTGGCGAGAA AGAAATTGAC
CGGGCTATCT CTGCTTTTAA CCAGAGGCAG AGACGATTCG GTGGTTTATA A
|
|---|
| Protein sequence | MDTTATINNT PPDHIAIIMD GNGRWAERRG LSRLEGHKAG LENARRVIRH LSSLGVKYVT
LYSFSTENWK RPDAEIKGLF GLINDVISSY IPELAGNNIR LRHLGHLDKL PAMLKHKLES
LLSETSQNSG LTLSLAFDYG GRDEIIQAVK KLVKDGIEPD KISEELFAGY LFTTGIPEAG
LIIRTGGEIR LSNFLLWQSA YSELYFSEVM WPDFGEKEID RAISAFNQRQ RRFGGL
|
|---|
| |