| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4896 |
|---|
| Symbol | |
|---|
| ID | 5094334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 5917515 |
|---|
| End bp | 5918696 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644744319 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_001197214 |
|---|
| Protein GI | 146302623 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0133] Tryptophan synthase beta chain |
|---|
| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.541071 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTA ACGTTAACGA AAAAGGATAT TACGGGGAAT TTGGAGGAGC TTACATTCCA
GAAATGTTAT ATCCGAATGT AGAAGAACTA CGCCAAAAAT ACTTAAGCAT AATGGACGAA
CCTGATTTTA AGGCAGAGTT CAACCAATTG CTTAAAGATT ATGTAGGACG CCCTAGTCCG
TTGTATTTTG CAAAACGCTT ATCAGAAAAA TACAATACAA AGGTTTATCT AAAAAGAGAA
GATTTAAACC ATACCGGAGC GCATAAAGTC AACAACACAA TCGGGCAGAT TTTATTAGCA
AAACGTTTAG GTAAAAAAAG AATTATTGCA GAAACCGGTG CGGGTCAGCA TGGTGTGGCA
ACTGCAACAG TCTGCGCACT AATGGGAATT GAATGCATCG TTTATATGGG AGAAATTGAC
ATTGCGCGTC AGGCACCAAA CGTTGCGCGT ATGAAAATGC TTGGTGCAGA AGTTCGTCCG
GCTCTTTCAG GTTCAAGAAC CTTAAAAGAT GCTACCAACG AAGCAATTCG TGATTGGATT
AATAACCCTG TAGACACACA TTATATCATT GGATCGGCAA TTGGACCGCA TCCTTACCCT
GATATGGTAA CACGTTTTCA GAGTATTATC TCAGAAGAAA TAAAATGGCA GTTAAAAGAA
AAAGAAGGAC GCGAAAATCC TGATTATGTT GTTGCCTGCA TTGGCGGCGG AAGTAACGCC
GCAGGAACCT ATTATCACTT TCTGCACGAA CCGCAAGTTG GAATTATTGC TGTTGAAGCA
GCCGGAAAAG GTGTTGACAG CGGGCACAGT GCTGCAACCA GTAAATTAGG AAAAGTCGGC
GTTATTCACG GTTGTAAAAC ACTGTTAATG CAGACGCCAG ACGGACAAAT TACTGAGCCA
TATTCGATTT CTGCGGGACT TGATTATCCT GGAGTTGGGC CTTTGCACGC ACATTTAGCA
CAAACCGGGC GCGGCGAATT TTTCTCTGTA ACAGATGATG ATGCTATGAA TGCTGGTTTG
CAGCTGACCA AACTAGAAGG AATTATTCCT GCTATTGAAA GCGCTCATGC ATTTGCAGTT
TTGGATCAGA AAAAATTCAA ACCAGAAGAT ATTGTAGTGA TCAGTCTTTC AGGACGTGGA
GATAAAGATT TAGATAATTA TATTGATTAC TTTAAATTGT AA
|
|---|
| Protein sequence | MSFNVNEKGY YGEFGGAYIP EMLYPNVEEL RQKYLSIMDE PDFKAEFNQL LKDYVGRPSP
LYFAKRLSEK YNTKVYLKRE DLNHTGAHKV NNTIGQILLA KRLGKKRIIA ETGAGQHGVA
TATVCALMGI ECIVYMGEID IARQAPNVAR MKMLGAEVRP ALSGSRTLKD ATNEAIRDWI
NNPVDTHYII GSAIGPHPYP DMVTRFQSII SEEIKWQLKE KEGRENPDYV VACIGGGSNA
AGTYYHFLHE PQVGIIAVEA AGKGVDSGHS AATSKLGKVG VIHGCKTLLM QTPDGQITEP
YSISAGLDYP GVGPLHAHLA QTGRGEFFSV TDDDAMNAGL QLTKLEGIIP AIESAHAFAV
LDQKKFKPED IVVISLSGRG DKDLDNYIDY FKL
|
|---|
| |