| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3892 |
|---|
| Symbol | |
|---|
| ID | 5090123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 4638298 |
|---|
| End bp | 4639293 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644743314 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001196222 |
|---|
| Protein GI | 146301631 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAAA ATAATTATCA AGGTGCCTTG CAGAAAAAGT TAAATTCAGG ATTTAATGCA
GCATCAACAG CAGAGGAAGT TATAAAAGGA ATCAATCTTG CAGGACAAAC AGCAATTGTA
ACAGGCGGAA ATACAGGCAT AGGTCTCGAA ACTGTTAAAA CACTTGCTGC TGCAGGAGCT
CATGTCATTG TACCGGCAAG AGACATTGTA AAAGCCAAAA GAAACCTTGA AGGAATAGAA
AATGTAACGA TAGAAGAAAT GGATTTAATG CAGCCAGAAT CTATCCATTC CTTTGCACAG
AAATTTATAA ATACAGGAAG ATCACTGCAT CTTTTGATTA ACAATGCCGG GATTATGTGG
GTACCGCTTC GCAGAGACAT ACGCGGGTAC GAATCACAGC TGGCAACCAA TTATCTCGCA
TTGTTTCAAT TAACAGCCGG GCTTTGGCCG GCATTAAAAA AAGCAGACGG CGCCAGAGTG
GTTAATGTAT CTTCTGGAGG ACATAAATTT TCTGATTTTA ATTTTGAAGA TCCTAATTTC
CTGAACCGTG AGTACGAAAC ACTGCTTGGA TACGGACAAT CTAAAACAGC GGTCAATCTT
TTTTCTTTGG AATTTGACAA CCGCGCCAAA GCTTACAATG TCCGCAGTTA TTCCTTATGT
CCAGGAGCAG TTGGAGAAAC AGAATTATCG AGAGAAGCTC CCATTGATTT ATTCCAAAAA
CTAGGTTTCA GCGATGCAGA AGGAAATATA CTGCCAGAAG TAGCGGCCTC ATTAAAAACC
ATTCCGCAGG GTGCGGCAAC AAGTATATGG GCTGCAACGA GTCCGCTTCT AAATCATATA
GGAGGAGTTT ACTGTGAACA CGTGGATATA GCTGAAATAA ATGAAAATAT GGCAGTTACA
GGAGGTATTG CGACCTATTC ATTAGACAAA TCAAATGTTC AAAAATTATG GAAGCTCACG
GAACAGCTTA CTGGAATTAC ATTTGATGTA CGTTAA
|
|---|
| Protein sequence | MEQNNYQGAL QKKLNSGFNA ASTAEEVIKG INLAGQTAIV TGGNTGIGLE TVKTLAAAGA
HVIVPARDIV KAKRNLEGIE NVTIEEMDLM QPESIHSFAQ KFINTGRSLH LLINNAGIMW
VPLRRDIRGY ESQLATNYLA LFQLTAGLWP ALKKADGARV VNVSSGGHKF SDFNFEDPNF
LNREYETLLG YGQSKTAVNL FSLEFDNRAK AYNVRSYSLC PGAVGETELS REAPIDLFQK
LGFSDAEGNI LPEVAASLKT IPQGAATSIW AATSPLLNHI GGVYCEHVDI AEINENMAVT
GGIATYSLDK SNVQKLWKLT EQLTGITFDV R
|
|---|
| |