| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3250 |
|---|
| Symbol | |
|---|
| ID | 5093411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 3885532 |
|---|
| End bp | 3887067 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644742677 |
|---|
| Product | RagB/SusD domain-containing protein |
|---|
| Protein accession | YP_001195585 |
|---|
| Protein GI | 146300994 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TAAGTCTTTT ATTATTGAGT TTTACGCTTT TAGTCGGCAC AACGGCTTGC
GAAAGCGAAC TTGATGTTGT ACCGCAGGGA GCACCTTCGA GCGGGAATTT CTGGAAAACT
CCGGCAGACG CAAAGGCTGG TGTAAATTCA ATTTACGCTT TGTATTCTGA TGATAATATG
TACGGCCGCG GTTTCTTTTG GCTGAACAAT GCCAGCGATG ACATCGGAAC AAAACCAAGA
CAAAACGCAG AACGTATTAA AAACTTTATT GTTGATGGTG CAGAATCAGA TACCAAAGAT
ATCTGGAGAA TTCACTACGA AATCATGAAA CGATGCAACG ACGTAATTCG TAACATTCCA
AATATTCCTT TAGATGAAAA AACTAAAAAC GGAATGTTGG GCGAAGCTTA TTTCAATCAT
GCAGTAATGC ATTTAGAATT GGCTTACCAT TATGGAGACG ATCGCGCGGG AATTCCAATT
CAGGACAGAG AAAACCCAAC AAACGTTTAC GTGCCGCGTG CTAAAAACGT TGCAGAAAAC
TACGCATATA TCGCTGCCGA TTTAATTAAA GCAGCTGATT TACTGCCTTA TTTTAATGAA
CTTTCGGCAG ATAATTACGG GCGCGCTCAT AAAACTGCCG CATGGGCTTA TTTAGTTCGT
ACGTATTTGT ATGCAAAAGA CTGGGACAAT GCTATAAAAT ATGCCAATAT GATTGTAGCA
AGCGGTAAAC ACAAACTGCT TGATAATTAT GAAGATGTAT TTAAAATTAA AAACAACTGG
TCTACAGAAT ATATCTGGTC TGTAACATCA AGTGCCGAAA ATACCTCTTT GGGTTCTATT
TTTCCGGGAG TTTGTTTAGA AGATAAAGGC TGGGGAGTTT ACAATGGCTG GGGAAATTTT
TATCCAACAA AAGAATTGTT TGATACCTAT GATCCAACTG ATAAAAGAAG AAGCGCTACA
ATACTTCAAA AAGGCGATAA GTTTGTTTAT TTTGGAGAAG AAGTAACTTT TAACGAAGGT
GCTCATATTG TAAGCTCAAG TAACAGAACA GGTTATCAGT TTAAAAAATA CATGGAGCCG
TTTAGTTATC CAAAAACGAC TTCAGGAGGA ATTGATATTC GTTATGTAAA TGCCAACGGA
GATAAACCTT CAACAGCTTT AAACGTACCG CTTTTACGTT ATGCCGATGT AATTTTAATG
CTGGCTGAGG CAAAATTAAT GAAAGGACAA AATGCCGATA CTGAAATCAA TATGATTCGT
CACCGTGCTG GTCTTGGAGA TCTTTCTGGA GCAACCATGA CCGATTTAAA AAGAGAAAGA
AGATGTGAGC TGGCAGGTGA GTGGACTGAT CGTCATTTTG ATTTAGTGAG ATGGGGAGAT
GCTAAAGAAA CTTACGCAAA ACCATTGCAC CATTATGACG GAAGTGTAAT TTATCCGGCA
CGTAATTTCA ACCCTGCAAT TCACCATGTT TGGCCAATAC CGCCAGATGA AATTGCAGTA
AGCAAAGGCG CTTTGACTCA AAACCAAGGC TGGTAA
|
|---|
| Protein sequence | MKKISLLLLS FTLLVGTTAC ESELDVVPQG APSSGNFWKT PADAKAGVNS IYALYSDDNM
YGRGFFWLNN ASDDIGTKPR QNAERIKNFI VDGAESDTKD IWRIHYEIMK RCNDVIRNIP
NIPLDEKTKN GMLGEAYFNH AVMHLELAYH YGDDRAGIPI QDRENPTNVY VPRAKNVAEN
YAYIAADLIK AADLLPYFNE LSADNYGRAH KTAAWAYLVR TYLYAKDWDN AIKYANMIVA
SGKHKLLDNY EDVFKIKNNW STEYIWSVTS SAENTSLGSI FPGVCLEDKG WGVYNGWGNF
YPTKELFDTY DPTDKRRSAT ILQKGDKFVY FGEEVTFNEG AHIVSSSNRT GYQFKKYMEP
FSYPKTTSGG IDIRYVNANG DKPSTALNVP LLRYADVILM LAEAKLMKGQ NADTEINMIR
HRAGLGDLSG ATMTDLKRER RCELAGEWTD RHFDLVRWGD AKETYAKPLH HYDGSVIYPA
RNFNPAIHHV WPIPPDEIAV SKGALTQNQG W
|
|---|
| |