Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fjoh_3247 |
Symbol | |
ID | 5093408 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Flavobacterium johnsoniae UW101 |
Kingdom | Bacteria |
Replicon accession | NC_009441 |
Strand | - |
Start bp | 3875655 |
End bp | 3882629 |
Gene Length | 6975 bp |
Protein Length | 2324 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 644742674 |
Product | leucine-rich repeat-containing protein |
Protein accession | YP_001195582 |
Protein GI | 146300991 |
COG category | [S] Function unknown |
COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAGAA AACTACTTAT TGGATTGCTA TTTCTGTTTA GCAGTCTATC TTTATTATCG GCCAAAAACA ATTTAAATAT TCCCATTCCG GATTCAGAAT ATCAGGCTTT GGTAGATTTT TATAAAGCTA CCGGAGAAGC CAGCTGGACG AACAAATGGA ATACGAGAGA AAATAATCTG CATGAAGTAG CCTGGTATGG CGTTACGGTA GAAAACGGAC ACGTTACTGC TATCGATCTT AACAATACCA GTAACATTTC TGGTTCTATT CCAGCTTCAT TTGGTAATCT GAAATATCTT AAATCGCTTT CTCTGTATGG AGGCGGTTAT GCAAAAGATT TCAGCACGAC AGATTTAAAT GTTTTTTCAG AATTAGAAGC ATTAGAAACG CTGGATTTAA GATACACCAA GTTAAAAGGC GTAATTCCAA CATCGTGGTC AAAATTAAAA AAGCTTCAAA CCCTTTATTT AAGTAATAAT AACATTACTG GATTATCAGC AGGGTTTGGG CAGATGGAAA GTCTTGTAAC TGTTGATCTT TCTCAAAACC AGATTACAAC TTTAATTAAA GAATTAGAGA ACTTAACGGC TCTTAGAAAC TTAAATGTAA CTTATAATAA AATTGCCACA GTTACAGCTT TACTGCCTAA TATAGTAAGT CTTAGTATAC AGTATCAGAC ACTTGGTCTT GAAAATATAA CCTACAGAGG AACCGACTTA AAAATAGGCA ATCTGCCTGG TGTAGTTTCG TACAGCAGAA CAAAAAATGA TTTTACCGCC AGACCAAAAT TTGCTCTTTA TGTGAGAGGA TATGAAATTG CCAATAATAT TGCAATGTCT GCCGACGGAA GTATCACAAT TTCGGCATCT TATCTTTCTT CTTTAAAAAA CGGTGATGAG GTTTACCTCT ATCAGCAATA CGATTATGAC ACAGGAGCTG TATCGAATTA CAGCCGAATT TATTTTACAA ATGTACAGGT TAACCAGCCG GCGGTTTCAT CAATAGAATA TCAGGCATTA GTTGATTTTT ACAATGCCAT GGGCGGCAGT AACTGGAATT ACAAATGGGA TATTAACGAA AACAATTTGA ATCAGGGTGC ATGGACAGGT TTAAGTATCG AAAACGGACA TGTTACAGGT TTAGATTTAG GAAATACAAG CAGTGTTTCG GGGTCAATTC CGGCTTCATT TGGAAATTTA AAGTATTTAA AGAATCTTTC GCTTTATGGT GGAAATTATT CAAAAAACCT AAGCACAACA GATTTAGGCG TTTTATCTGA ATTGCAATCG CTTGAAACAT TAAATTTAGA ATATTGCAGA ATTTCGAGTG CAATTCCGTC TTCATGGAGT AAATTAAAAA AACTAAAAAC CATCATTATA TCTGGTAACA CTATTGCAGG ACTGCCTGAA GAATTGGGCG AAATAGAAAG CTTAGTTACA TTAGAGGCAA ACAACAACCA GATAAAATCG ATTCCTGCTT CAGTAGGAAA TCTCGCGAAT CTGGTTACCT TGAATTTATC CTACAACCAG ATTACGACAT TAGTAAAAGA ACTGGAAAAT GTAAATACAT TAAGAACATT AAACATTAAC AGCAACAGTA TATCGGTTGT TTCTGCGTTG TTAAGCAGTA CGGTTAATTT AAATCTTACT TCTCAAAACA TAAATGTTGA AGGCATTATT TACACAGGTT CTGATTTAAA AATAGAAACA CTGCCAAATA CAACGTATTA CAACAGAACC AAAAATGATT TTTCTTCCAG AAGAAACTAC TATGTATACG TGGGAGGAAA TCAGGTAGGA AATCTTATCA CGGCAGCGGC AGACGGCAGT GTTATAATTC CGGCATCTTA TTTATCTTCA ATAAGAACAG GAGATCAGTT TTATTTGTAT CAAAATTACG ATTATAACGA AGGAGGTACT GCCCATTATT CAAGAATCAA TTTTGTAAAT GTAAAAGTAG AGCAGCCACA AATCCCGGAT GCAGAATATC AGGCTTTGGT TGATATTTAC AATGCCATGG GAGGTGCAAA CTGGAACAAC AAATGGGATG TTTCATCAAA TAATCTGCAT GAAGGAGCTT GGTATGGCGT GAGCATTGAA AACGGACATA TTACAGGATT AAGTTTTAAT AATACCTGGA ACGTTTCAGG AACAGTTCCG GCTTCTATAG GAAATCTTAA ATATTTAAAA AATCTTTCAT TTTATGCAGG AAGCTACAGC AAAAATTTAA GCACAACCGA TTTAAACGTT TTTTCTGAAT TAGAATCTTT AGAAACTTTA GATCTTCAAT ACAGCAAAGT AAAAGGCGAT ATTCCGGCTT CATGGAATAA ACTGAAAAAA CTAAAAACAG CCTATTTAGG TTATAATACT TTAACTGCTT TACCAGAAAA TATTGATGCT ATGGAAAGTC TTGTAACTCT TGGAGTACAA GGCAACCAGT TAAAAAGCAT TCCGGTTTCT ATAGGTAATC TGACTAAACT TGTAACTTTA GAATTATCAG ATAACCAGAT AGAAGTTCTT ATAAAAGAAT TGGAAAACAT TAGCACGCTT AGAACTTTAA ATCTTCAAAG TAATAATATA AAAGATGTCA AAGCATTGCT AAACAGTAAT GTAAGTCTAA ATCTTCATTA TCAAAATATA AATGTAGAAG GACTAATTTA TACCGGCGTA GATTTAAAAG TCGAAACACT GCCTAATCCT GTTTATTACA ACAGAACAAA CAACGATTTT ACAGCCAGAA GAACCTTTTC GGTATATGTA GGAGGAAATC AGGTGGGCAG TACAATTACT GCAGACGAAG ACGGAAGCAT TGTAATTCCG GCATCTTATT TATCGTCTAT TAAAACCGGC GATTTGTTTT ATTTGTATCA GCCTTATGAT TATTATAACG GAAGTGTTAC TAATTATTCA AGAATCAACT TTGTAAATGT AAAAGTAGAC CAGCCAAAAA TTCCGGATGA AGAATATCAG GCATTAGTTG ATTTTTATAC TGTTATGAAT GGTACAAACT GGACAAATAA ATGGAATGTT GCCGAAAACA ATCTTCATGA AGGTGCATGG TATGGCGTAA GTATTGAAAA CGGACATATC TCAGGACTTA ACCTTAACAA TAACAGTTCA GTAAGAGGAG CGATTCCGGC TTCGATTAAA GATTTAAAAT ATCTTAAAAC TTTATCTCTT TACGGCGGAA GTTACAGCAA AGATTTTAAT ACCACAGACT TGGCAGTTTT ATCTGAACTT GAAAACCTGG AATATTTAGA TTTAAGATAT ACCAAAATTA AAGGTGATAT TCCTGCTTCA TGGAACAAAT TAAAAAAGGT AAATACACTT TATCTGGGCT ACAACGCACT TACGGCTTTG CCGGAAGATT TTGGAGGAAT GGAAAGTCTG GTAACAGTCG ATTTGGCTTC AAACGAAATA AAAGTAATTC CGGCTTCGAC AGGAAATCTG GCTTCTTTAA AAACTTTAGA TTTATCGTAT AATAAAATTG AAGTGCTTAT TAAAGATTTG GAAAAAAACA CAGCTTTAAC GAGTCTGAAT TTATCGAATA ATAAAGTTGG CGTAATTCAG GGAATGTTGA CAAACCGCGT AAGCTTGAAT TTAAATTATC AGACTTTAAG CGTTGAGAAC TTTTTATATG AAGGAACCGA TGTTAAAGTG AGCAATCTTC CAAGCACTAT TCTTTACAAT AAATCAAGCA ACGATTTTTC TGCTCAAAGA CCCTTTAGAT TGTATGTAAA AGGTGAGCAG ATAGGAAGTA ATATTACAGT TGCCAGCGAT GGAACAATTA CAATTCCGGC AGATTATCTG GCAACTTTAA AAACCGGAGA TGAATTGTAT TTATATCAGC CTTATGAAGG ATCTGAAGCT TCTCCAAACT ACTCTAGTGT CTATTTTACC AACGTAAAAG TAGATCAGCC AAAAATTCCA GATGCAGAAT ATCAGGCTTT GGTAGATTTC TATAATGCCA TGAATGGGGC AAACTGGAAC AATAAATGGG TAACGGCAGA AAACAATCTG CATGAAGGAG CGTGGTATGG CGTAAGTATT CAAAACGGAC ATATTACAGG ATTAAACCTA AACAATAATT CGAATGTTTC CGGAGCAATT CCGGCATCGT TTGCCAATTT AAAATATTTA AAAAACCTTT CTTTATTTGG AGGAAATTAT ACAAAAAATC TAAGCACAAC TGATTTAGGA ATTATTTCAG GCCTTGAATC TTTAGAGATT TTAGATCTTA GATATACAAG GTTAAAAGGT GTTATTCCAT CGTCATGGAG CAAACTGCAG TCATTAAAAA CGTTGTATTT AAGTAATAAT AACATTGAAG ATGCAGATGA AGCCCTGGCA CATTTACCTC TTTTAAAAAC AGTAGATTTT AGTTATCAAA CCATTACAAT TCCAACTATC GAGGTAGGAG CAAACGAACT GGTTATAAAC CTGCCGGTTT TATCAACTTT TTTGTTTAAT ACTAATGGCG GTGTTATTAA TAATAAAAAC TATTTTACAC TTTACATTAA TGGTGTTAAT AAAGCCTCAA ATTATTCTAA CAGCGAAGGA AAATTAATCT TCAAAGACAT AGCTTTATTT GGAATTAAAC TAACTGACAA AATCAGCATT CAGCAGAATG ATGGTACAGC ACAGCAAACT ACTATTAATT ATACTCAGGT AGTTTTTGGA AAACCATTAA CAGATGAAGA ATTTGAGATT TTGAAAAAAA TCTACGCGAG TACAAACGGA ACACAGTGGA CTCAGAAATG GGATATTTCG CAAAATAAAC TTCATGAAAT AAGCTGGTAC GGAGTTGGAA CAAAAGACGG ACACGTTGTT TCGTTGAGTT TATCTGCCAA TAATCTATCA GGATCGCTTC CTGCTGAGTT GTCTGATTTA ACGCATTTAG AGACTTTAAA CCTGCAGTCG AATGCCATTG AAGGGGCTCT GCCGTCTGAT TTAGGAAGGC TGACCAGTTT AAAAACACTT AATTTACAAT CGAACAAATT TACAGGAACA CTGCCGGTTT TATCGGGAAT TTCAGGATTG AAAAAACTTT CAATTGCAGG AAATACTTTC AAAGGAACAA TTCCGGGGCA TTTCAATGAT TTCGAAAATA TCGAACAAAT TGATCTTTCA AACAATGGTT TTGATGCTTT AGAAAGACCA TTTACTTACG ATCTGGCTAA AGTTTACATT AATTTAAGAG GACAGGTTAT TGCCAAAGAT GAATATCTTT ATTTAAAAGG CGACGAAATA GTTGTAGATC TTCCAGCAAT TACAACTTAT AATGAAACCA CTCAGGATTA TTCAGGACAA TACCAGTTTG AACTGCAGGC TAATAATTTC AAAATTTCTG AAGCCACAGT TTCAGGTAAT ACCATAACAT TCCCAAATAT TTCTGTGGCG GGTATACCTG CGGGTGCAAA AATTGCAATT TGGCAGAAAA ACGGAACTTC GCAGGGAACT TATGTTCAAT TTAAAGGAAT TGCCGATGGT TCTGAAACGC CTTTAATTGC CGAAGAATAT GATGCTTTAG TGGCATTTTT CCAAAGCGCA GGCGGAACAG GATGGAAAGA AGTCTGGGAT ACATCATCAA ACAATCTTCA TGAAAAGAAA TGGAAAGGTG TAACGACAAA CGACGGACAC GTAATATCTA TTAATCTTCC TGATAACAAC TTAACCGGAA ATATCAGCCC GGAAATTGGA AAATTCAGCG AACTGCAAAA CCTAAATCTG GCTAAAAATA AACTAACAGG AACAATCCCT GAAAGTGTAT CAAAAATAAC CAAGCTAAAA ACAGTTGACC TTTCAGAAAA CGAACTGACG GGAATTGATG CTGCGTTTTT ACCAGCAGTG AATTTTAAAA TTGACCGTCA GAAAATTAAT TTGGGAGAAC TGCCTTTAAC ATTAAATGCT GTTTTAAAAG ATCAAAAAAT CAACCGTTAC GATCATACCA ATTCGATTTT TAATGCCACT CAGTCGTATA ACATGACTTT GAAGGATTAT TTCCAAATGG TTACAGTTCC TGAAGACGGC ATTAAACTGA CCAATATTTT AAGCGAATGG AATGTGCCAA ACAACCAGAC TTTAGAATTA AGACAAATCG CCGGATCTGC CAGAAACAGT GTACTAACGT ATACCATAAC GTACAGAGAA GGAGATTCTA ATTTAGACGG AATTGTAAAT ATTCTGGATA TTCAATCGAC TTTGAATTAT ACATTAAGCC AAAAACCAAA ATTCTTTAAT TATGGTGCGG CAGATATCAA TAAGGATAAA AACCTAAACG TACTGGATAT TATTTCATTG ATTAATAAAA TCCAGTCCGG AACACTTGAA AATCCTGCAA GCGCAAAACG TATGGCTTTT ACGGACAATG AAGATGTTGT TTTAAGTATT GAAGATAATA CGCTTTTTAT CGACAATCAG TCGGTTTCGA CAGCAGCATT TGATATTCGT TTAAAAGGCG GCAGCAAAGC ACAGACAGAA GAGCTTCTTT CTGGTTTGGG TTATACGGTT TCAGTCGCAG AACGTCAGGG CGAAATTAGC ATTGTAGGTT TCTCTATGGA TAAATCACTT TCACGAAAAC AAGCTATTGC AAAAGTATCA GCTCAAACAG AAATTTTATC TGCCGTGATT TCAAATACAG AGGCAAACGC ATTGACCTAT AAAATTTCTA AAAATTTGGG TGTTGACGAT AGTAATAAAG ACAATGCAAT TGCGCTTTCA AATTATCCAA ATCCATTTAC GGATCAAACT GTAATTCAAT ATCATTTACC TGAAAATGAA GACAAAGCGA CACTAAAAGT TTTTGATACA ACCGGAAGAA CTGTTTACAT ACAGTCTGAT CTTGATGCAT CACAAGGAAA TCATGAATTT ACTTTTCAGC GAAGAGATCT TGCATCGGGA ATCTATTTCT ATACCATCGA AATACAAAAT GGAGCAAAAC CTGCCATTTT TAAAGGAAAA ATGTTAATAC AATAA
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Protein sequence | MKRKLLIGLL FLFSSLSLLS AKNNLNIPIP DSEYQALVDF YKATGEASWT NKWNTRENNL HEVAWYGVTV ENGHVTAIDL NNTSNISGSI PASFGNLKYL KSLSLYGGGY AKDFSTTDLN VFSELEALET LDLRYTKLKG VIPTSWSKLK KLQTLYLSNN NITGLSAGFG QMESLVTVDL SQNQITTLIK ELENLTALRN LNVTYNKIAT VTALLPNIVS LSIQYQTLGL ENITYRGTDL KIGNLPGVVS YSRTKNDFTA RPKFALYVRG YEIANNIAMS ADGSITISAS YLSSLKNGDE VYLYQQYDYD TGAVSNYSRI YFTNVQVNQP AVSSIEYQAL VDFYNAMGGS NWNYKWDINE NNLNQGAWTG LSIENGHVTG LDLGNTSSVS GSIPASFGNL KYLKNLSLYG GNYSKNLSTT DLGVLSELQS LETLNLEYCR ISSAIPSSWS KLKKLKTIII SGNTIAGLPE ELGEIESLVT LEANNNQIKS IPASVGNLAN LVTLNLSYNQ ITTLVKELEN VNTLRTLNIN SNSISVVSAL LSSTVNLNLT SQNINVEGII YTGSDLKIET LPNTTYYNRT KNDFSSRRNY YVYVGGNQVG NLITAAADGS VIIPASYLSS IRTGDQFYLY QNYDYNEGGT AHYSRINFVN VKVEQPQIPD AEYQALVDIY NAMGGANWNN KWDVSSNNLH EGAWYGVSIE NGHITGLSFN NTWNVSGTVP ASIGNLKYLK NLSFYAGSYS KNLSTTDLNV FSELESLETL DLQYSKVKGD IPASWNKLKK LKTAYLGYNT LTALPENIDA MESLVTLGVQ GNQLKSIPVS IGNLTKLVTL ELSDNQIEVL IKELENISTL RTLNLQSNNI KDVKALLNSN VSLNLHYQNI NVEGLIYTGV DLKVETLPNP VYYNRTNNDF TARRTFSVYV GGNQVGSTIT ADEDGSIVIP ASYLSSIKTG DLFYLYQPYD YYNGSVTNYS RINFVNVKVD QPKIPDEEYQ ALVDFYTVMN GTNWTNKWNV AENNLHEGAW YGVSIENGHI SGLNLNNNSS VRGAIPASIK DLKYLKTLSL YGGSYSKDFN TTDLAVLSEL ENLEYLDLRY TKIKGDIPAS WNKLKKVNTL YLGYNALTAL PEDFGGMESL VTVDLASNEI KVIPASTGNL ASLKTLDLSY NKIEVLIKDL EKNTALTSLN LSNNKVGVIQ GMLTNRVSLN LNYQTLSVEN FLYEGTDVKV SNLPSTILYN KSSNDFSAQR PFRLYVKGEQ IGSNITVASD GTITIPADYL ATLKTGDELY LYQPYEGSEA SPNYSSVYFT NVKVDQPKIP DAEYQALVDF YNAMNGANWN NKWVTAENNL HEGAWYGVSI QNGHITGLNL NNNSNVSGAI PASFANLKYL KNLSLFGGNY TKNLSTTDLG IISGLESLEI LDLRYTRLKG VIPSSWSKLQ SLKTLYLSNN NIEDADEALA HLPLLKTVDF SYQTITIPTI EVGANELVIN LPVLSTFLFN TNGGVINNKN YFTLYINGVN KASNYSNSEG KLIFKDIALF GIKLTDKISI QQNDGTAQQT TINYTQVVFG KPLTDEEFEI LKKIYASTNG TQWTQKWDIS QNKLHEISWY GVGTKDGHVV SLSLSANNLS GSLPAELSDL THLETLNLQS NAIEGALPSD LGRLTSLKTL NLQSNKFTGT LPVLSGISGL KKLSIAGNTF KGTIPGHFND FENIEQIDLS NNGFDALERP FTYDLAKVYI NLRGQVIAKD EYLYLKGDEI VVDLPAITTY NETTQDYSGQ YQFELQANNF KISEATVSGN TITFPNISVA GIPAGAKIAI WQKNGTSQGT YVQFKGIADG SETPLIAEEY DALVAFFQSA GGTGWKEVWD TSSNNLHEKK WKGVTTNDGH VISINLPDNN LTGNISPEIG KFSELQNLNL AKNKLTGTIP ESVSKITKLK TVDLSENELT GIDAAFLPAV NFKIDRQKIN LGELPLTLNA VLKDQKINRY DHTNSIFNAT QSYNMTLKDY FQMVTVPEDG IKLTNILSEW NVPNNQTLEL RQIAGSARNS VLTYTITYRE GDSNLDGIVN ILDIQSTLNY TLSQKPKFFN YGAADINKDK NLNVLDIISL INKIQSGTLE NPASAKRMAF TDNEDVVLSI EDNTLFIDNQ SVSTAAFDIR LKGGSKAQTE ELLSGLGYTV SVAERQGEIS IVGFSMDKSL SRKQAIAKVS AQTEILSAVI SNTEANALTY KISKNLGVDD SNKDNAIALS NYPNPFTDQT VIQYHLPENE DKATLKVFDT TGRTVYIQSD LDASQGNHEF TFQRRDLASG IYFYTIEIQN GAKPAIFKGK MLIQ
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