| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3175 |
|---|
| Symbol | |
|---|
| ID | 5093337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 3781064 |
|---|
| End bp | 3782470 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644742603 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001195511 |
|---|
| Protein GI | 146300920 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.386097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTAG TGGTTTTAAG GCTTCAATCT TATACTGATT TATTTTTTAC TGCGGTATTA
GGCCGAGAGA AAAAATTCAC TTCAGGCAGT ATTAATCGGG CAATTGTATT GCTTGCCGTT
CCTATGGTTT TAGAACTGGT GATGGAATCT GTTTTTGTTT GTGCCAGTTT GTTTTTTGTG
AGCAAACTTG GCGCAGCAGC TGTTTCTATT GTGGGTTCTA CAGAATCTGT TATCAGCTTT
TCGTATTCCG TTTCAATTGG TCTAAGCATT GCCGCTTCGA CTTTAATTGC AAGGCGCGTT
GGCGAGCAGA ATTTTAAGGA TGCAAACATT ACAGCTGGGC AGGTAATAAA CATAAGCATT
ATCTGCGGTA TTTTAATAAG TATCATATGC TTTATATGGA GTAATGAAAT ACTTGGGCTT
GTAGGACTTT CTCCAGCAGT TATAGAACAA GGCAGTTTGT ATGCAAAAGT AATGTTTGCG
AGCTGCGGTT TTATTATAAT CCGTATTGCA TTAAATGGTA TTCTTCGCGG TGCCGGTTCT
GCCTCTATGG CAATGCGAAC ACTATGGCTT TCGAATGCAT TAAATATTCT TTTATGTCCT
CTTCTTATTT TTGGATGGGG ACCAGTACCT GCATTTGGAC TATTAGGAGT TGGTATAGCT
ACTGCGGTGG CACGTTTTAT AGGAGTTTGT TATCAGGCAT TTCATTTGAT TAAAGGAACA
ACCATTATTC AAATTGGAAA AGAGCAGCTG GCACTTCATC ATGAAACCTT TAAAAAAGTA
ATGAGACTTA CTTTTGGAGG TATGCTGCAG TATCTGATTC CTGCATCGAG CTGGCTGTTT
ATGATCAAAA TCGTTTCTCA TTTTGGAGGA AATGCTCTTG CAGGTTATAT AATAGCACAA
CGCGTTGCAT CAATAGTTAC TACGCCGGCT TGGGGAATAG GAAATGCAGC GGGAATTTTA
ACCGGACAAA ATTTAGGAGC TCAAAAACCT GAAAGAGCCG AAAAATCGGT CTGGAGAGCA
GGTATGATCA ATATGTGCTT TTTGATTACA GTGGCAATTG GGTGGATTTT TATGGCAGAT
CCTGTTGTCA GAATCTTTTC TGACGTGCCC GAAGTAATTG ATAACAGCAC AACCTACATT
CACATTATTT CCATCGCCTA TGTATTATTA GGATATACAA TGGTTATTTC AAGAGCACTT
AATGCTGCCG GAAAAGTTAT GATTGTCACC CTGCTTTACA TTCTCATGTT TTACGTGATA
CAAATACCAC TTTCTTATGT CTTTGCAGTA GCATTAGGAT TTGGTCCAAA AGGCATTTTT
GCCGCAATAT TACTTTCAGA ACTTGTATTG GCTTTTGGCT GTATTACAAT ATTCAGAACA
GGAAAATGGA AACTGACTAA AGTTTAA
|
|---|
| Protein sequence | MKVVVLRLQS YTDLFFTAVL GREKKFTSGS INRAIVLLAV PMVLELVMES VFVCASLFFV
SKLGAAAVSI VGSTESVISF SYSVSIGLSI AASTLIARRV GEQNFKDANI TAGQVINISI
ICGILISIIC FIWSNEILGL VGLSPAVIEQ GSLYAKVMFA SCGFIIIRIA LNGILRGAGS
ASMAMRTLWL SNALNILLCP LLIFGWGPVP AFGLLGVGIA TAVARFIGVC YQAFHLIKGT
TIIQIGKEQL ALHHETFKKV MRLTFGGMLQ YLIPASSWLF MIKIVSHFGG NALAGYIIAQ
RVASIVTTPA WGIGNAAGIL TGQNLGAQKP ERAEKSVWRA GMINMCFLIT VAIGWIFMAD
PVVRIFSDVP EVIDNSTTYI HIISIAYVLL GYTMVISRAL NAAGKVMIVT LLYILMFYVI
QIPLSYVFAV ALGFGPKGIF AAILLSELVL AFGCITIFRT GKWKLTKV
|
|---|
| |