Gene Fjoh_3109 details

Gene Information

• Locus tag: Fjoh_3109
• ID: 5093105
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Flavobacterium johnsoniae UW101
• Kingdom: Bacteria
• Replicon accession: NC_009441
• Strand: -
• Start bp: 3677164
• End bp: 3679098
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 644742537
• Product: glycoside hydrolase family protein
• Protein accession: YP_001195445
• Protein GI: 146300854
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3507] Beta-xylosidase

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAAGAT TGGTTTTCTA TTTTCTGATA TTAATGACTG TTTTTAGTCC GGCGAAAGCT 
CAAAATACGG CAAGTGGAAT GCCGCCTGTT CTTGCTGAAA AAGATTTGAC GGCTTATTTA 
TTTGTTTATT TTATTGGAAA TAAAGTCGAA GAAGAAGCGG TTAATTATGC CGTAAGTACA 
GATGGTTATC ATTATTACAG TCTTAATAAT AATAAACCCG TTTTAGACAG TAAAACAATC 
AGTTCTACAG GAGGTGTTCG AGATCCGCAT ATCCTGCGCG GTGAAGACGG CAAGACATTT 
TATATGGTTT TGACTGATAT GACTTCTTCC AAAGGCTGGG ACAGCAATCG TGCAATGGTC 
TTGCTTAAGA GCACTGATTT GGTAAACTGG AAAAGCAGTG TTGTTAATAT TCAAAAAGCA 
TTTTCGGGAA ACGAAGATTT AAAACGAGTT TGGGCACCAC AGACGATTTA TGATACAAAA 
GCGGGTAAAT ACATGATTTA TTTTAGTATG AAACATGGCA ATGAACCTGA TAAAATCTAT 
TACGCTTACG CGAATGCGGA TTTCACAGCT TTAGAAAGTG CTCCAAAACT GCTTTTCGTT 
CCAAAATCAA AAGGTGCGTG TATTGATGGC GATATTATTC TAAAAGACGG TGTGTATCAT 
CTTTTCTACA AAACAGAATC AGAAACGGCA GGAATAAAAA CAGCCGTAAC GAACGATTTA 
ACTTCTGGAA ATTGGACTGA AAATGATAAT TATCTGCAGC AAACCAAAGA GAAAGTAGAA 
GGTTCGAGTA TCTTTAAACT CAATAATTCG GATGAATATA TTTTAATGTA CGATTTATAT 
TCAAAAGGAA AATATCAGTT TACGAAAACC AAAGATTTAG AAAATTTCAC GGTTATTGAT 
ACTGATATTT CAATGGATTT TAAACCGCGT CACGGAACGA TTCTTCCGAT TACGCGTTCT 
GAATTAAAAC GAATTACTGC AAAATGGGGA ACGCCTTCGC AGCTTTCAAA AATAAATAAC 
AATCCAGTTT TAGAAGGTTA TTACGCAGAT CCTGAAATTC TGTATTCAAA CAAAACTAAA 
AAATATTATA TCTATCCTAC AAGCGACGGA TTTAATGATT GGTCAGGATA TTATTTCAAA 
ACATTTTCGT CTGATAATTT AGTAGATTGG AAAGATGAAG GTATAATTCT AGACCTAAAA 
AAAGACGTGT CTTGGGCAAA CAGAAATGCC TGGGCGCCTT GTATTGTAGA GAAAAAAATA 
AAAGGAAAAT ACCAATACTT CTATTATTTT ACGGCGGCAC AAAAAATTGG TGTTGCCGTT 
TCCGATAATC CAACTGGACC TTTTAAAGAC AGCGGAAAAG CAATCGTAGC AGAAAGACCT 
CAAGGCATAA AAGACGGTCA GGAAATTGAT CCTGATGTTT TTACAGATCC TAAAACAGGG 
AAAAGTTATT TGTATTGGGG AAATATGTAC ATGGCCGCTG CAGAATTAAA TCCGGATATG 
GTTTCGCTAA AAGAAGGAAG TACTAAAATA ATTGAAGTAA ATAAAAGCTT TAGAGAAGGA 
ACGTATGTAA TTTACAGAAA TGGCAAATAT TATTTCTTTT GGAGTGAAGA CGATACAAGA 
AGTCCAAATT ACAAAGTAAG ATACGGTATT TCAGATTCAC CGCTTGGACC TCTTGAAATA 
CCGCAGAATA ATATTGTCAT TCAAGGAATT CCAAAACAGG GAATTTATGC AACGGGACAT 
AATTCAGTTT TGCAGATTCC CGGAAAAGAT GAATGGTATA TTGTGTATCA TAGATTTTCG 
TATCCAACAG GTATTAAAAT GGGACGTGCA GGCGGTTTTC ACCGCGAGGT TTGTATCGAT 
AAATTAGAGT TTAATACGGA AGGATCAATA AAAGAAGTAG TTGCTACTCA TACCGGAATT 
GAAAGCTTAA GGTAG 

 

Protein sequence

MERLVFYFLI LMTVFSPAKA QNTASGMPPV LAEKDLTAYL FVYFIGNKVE EEAVNYAVST 
DGYHYYSLNN NKPVLDSKTI SSTGGVRDPH ILRGEDGKTF YMVLTDMTSS KGWDSNRAMV 
LLKSTDLVNW KSSVVNIQKA FSGNEDLKRV WAPQTIYDTK AGKYMIYFSM KHGNEPDKIY 
YAYANADFTA LESAPKLLFV PKSKGACIDG DIILKDGVYH LFYKTESETA GIKTAVTNDL 
TSGNWTENDN YLQQTKEKVE GSSIFKLNNS DEYILMYDLY SKGKYQFTKT KDLENFTVID 
TDISMDFKPR HGTILPITRS ELKRITAKWG TPSQLSKINN NPVLEGYYAD PEILYSNKTK 
KYYIYPTSDG FNDWSGYYFK TFSSDNLVDW KDEGIILDLK KDVSWANRNA WAPCIVEKKI 
KGKYQYFYYF TAAQKIGVAV SDNPTGPFKD SGKAIVAERP QGIKDGQEID PDVFTDPKTG 
KSYLYWGNMY MAAAELNPDM VSLKEGSTKI IEVNKSFREG TYVIYRNGKY YFFWSEDDTR 
SPNYKVRYGI SDSPLGPLEI PQNNIVIQGI PKQGIYATGH NSVLQIPGKD EWYIVYHRFS 
YPTGIKMGRA GGFHREVCID KLEFNTEGSI KEVVATHTGI ESLR