Gene Fjoh_1625 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFjoh_1625 
Symbol 
ID5090976 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFlavobacterium johnsoniae UW101 
KingdomBacteria 
Replicon accessionNC_009441 
Strand- 
Start bp1873419 
End bp1874057 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content31% 
IMG OID644741032 
Productpolysaccharide deacetylase 
Protein accessionYP_001193976 
Protein GI146299385 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.679944 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCTTTT ATTGGGTAAA AACTAATTCA TTTATAAAAA AGATATTTTC TAAATATTGC 
TGGGATATTC CAAACAATGA AAAGAAAATA TACTTAACAT TTGATGACGG CCCTACCCCG 
GAAATTACTG ACTGGGTTTT ATCTGAATTA AAAAAATTCG ATGCTAAAGC TACTTTTTTC 
TGTATCGGAA AAAATATCAA AGCCAATTTA TCTTTATTCG AAAAACTAAT TAGAGACGGA 
CATTCTATTG GAAATCACAC CATGAACCAC GTAAATGGAT GGAAAATACA CACTAATGAT 
TATATCGAAA ATGTAAAAAA TTGCGCCCAG ATTTTAGAAG AAGAAATAAA ACCAAACAAT 
TTGATATTTC GCCCGCCTTA CGGAAAAATC AAAAAAGCGC AGTCTAAAAT TTTAAGAAAA 
CTAGGTTACA AGATCATAAT GTGGGACGTT TTGAGCGCTG ATTTCGATCA GTCTATTACT 
CCTGAAAAGT GTCTTGAAAA TGTAACTAAA AATGTAAAAT CCGGAAGTGT AATTGTATTT 
CATGACAGCA TAAAAGCTTC GCCAAATTTA AAATTTGCTC TGCCAAAAAC GCTTCATTTT 
TTAAAAGAAA ATGGATATAA ATTTGATATT ATACACTGA
 
Protein sequence
MSFYWVKTNS FIKKIFSKYC WDIPNNEKKI YLTFDDGPTP EITDWVLSEL KKFDAKATFF 
CIGKNIKANL SLFEKLIRDG HSIGNHTMNH VNGWKIHTND YIENVKNCAQ ILEEEIKPNN 
LIFRPPYGKI KKAQSKILRK LGYKIIMWDV LSADFDQSIT PEKCLENVTK NVKSGSVIVF 
HDSIKASPNL KFALPKTLHF LKENGYKFDI IH