| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_1202 |
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| Symbol | |
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| ID | 5089747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Flavobacterium johnsoniae UW101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009441 |
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| Strand | + |
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| Start bp | 1366605 |
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| End bp | 1369970 |
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| Gene Length | 3366 bp |
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| Protein Length | 1121 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 644740604 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001193553 |
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| Protein GI | 146298962 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.851406 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGTAAAA ACGTATTATA TACAACATAC GATAATCTGC CAAAAGCACA GCAGATTGCA
TCAGGTTTAT TAGAAGGGAA TCAGATAAAA ATGAATATCA GCGGATTACT TGGATCTGCT
GTTTCATTTA TAATTCGTTC CGTTTTTAAG AAAACCGAAC TGCCTTTTTT GATTGTTTTA
GACAACAAAG AAGAAGCCGC ATATTACCTA AACGATCTGG AGCAGATGAT TGGCGAACAG
GACGTTTTGT TTTATCCCGT ATCATTTCGC CGTCCGTATC AGGTTGACGA AACAGACAAT
GCCAATGTTC TGCTTCGCGC TGAGGTTTTA AACCGAATCA ATTCAAGAAA AAAACCAGCT
GTAATTGTTA CTTATCCTGA AGCACTTTTT GAGAAAGTAG TAACGCGCCA GCAATTAGAT
AAAAACACTT TAAAAGTCTC TTTAAACGAT AAAATTTCGA TTGATTTTAT TAACGAAGTT
TTATTTGAAT ACGAATTTAA AAGAGTCGAT TTTATTACAG AACCCGGCGA ATTTTCAGTT
CGCGGGGGAA TTGTCGATGT ATTCTCATTT TCAAACGACC ATCCTTACAG AATTGAGTTT
TTTGGAAATG AAGTAGACAG CATTAGAACT TTTGATGTAG AAACACAATT ATCTGTAGAA
ACACATAAAA AGATTACGAT TATCCCAAAT GTTGAAAACA AGATATTTCA GGAAAACCGT
GAAAGTTTCT TAGATTATAT TGCCGAAAAA ACAGTTCTTT TTATTCAAAA TACCGAAGGA
CTTTTCAGTC AGTTAGACAA ACAATTTGCA AGGGCAGAAG AAGCTTTTGA GAAATTGTCT
AAAGAAATAA AACACGCTGC ACCAGAACAG TTGTTTTTAA ATCAGGCTTC GTTTATAAAA
CGAGCATTGG ATTTCTCGGT TGTAGAATTG GCTTCAAGAC CAGTTTTTAA AACCACTAAA
AAATTCGAAT TCCATATTCA GCCTCAGCCG TCATTCAACA AACAATTTGA TTTATTGCTG
AATAATTTAA GCGATAATCA TTTTAACGGA TATGTCAATT ATCTGTTTTG TTCGAATGAA
ACGCAGGCAA AGCGTTTTCA CGATATTTTT GAAAGCTTAG ACGAAGCCAA TTCAGAAAAT
ATTAGAAAGC ATTATCATAC CATTGTATTG CCTTTATATC AAGGTTTTAT TGATGAAGAA
AATCAAATAA CCGCTTATAC CGATCACCAG ATTTTTGAGC GTTATCATAA ATTCAACATT
AAAAACGGAT ATTCTAAAAA ACAGAATATC ACGCTTAAAG AATTAACTGC ACTTTCTGTC
GGCGATTATG TAACACACAT AGACCATGGA ATTGGAAAGT TTGGCGGATT GCAGAAAATT
CAGGTTGAAG GCAAAACCCA GGAAGCCATA AAACTGGTTT ATGCCGATAA TGATATTGTG
TATGTGAGCA TTCACTCGCT TCATAAAATT TCGAAATACA ACGGAAAAGA CGGAACGCCT
CCGAAAATCT ATAAACTTGG ATCGAACGCC TGGAAGGTTT TAAAACAGAA AACCAAAGCG
CGCGTCAAAC ATATTGCATT CAATTTGATT CAGCTGTATG CAAAACGTCG TTTAGAAAAA
GGGTTTCAGT TTGCGCCGGA CAGTTATCTT CAAAACGAAT TAGAAAGTTC GTTTATTTAC
GAAGATACGC CGGATCAAAT GAAATCGACA CAGGAAGTAA AAGCCGATAT GGAAAGCGAT
CGTCCAATGG ATCGTTTGGT TTGCGGTGAC GTTGGTTTCG GAAAAACAGA GGTTGCCATT
CGTGCAGCTT TTAAAGCCGT TGACAACAGT AAACAAGTGG CAGTTTTGGT ACCGACAACT
ATTTTGGCGT ATCAGCATTA CAGAACTTTT TCTGAACGTT TAAAAGACAT GCCAGTTTCA
ATTGGCTATT TAAACCGATT TAGAACGGCA AAACAAAAAA CACAAACGCT AAAAGATTTA
GCCGAAGGAA AACTGGATAT TGTAATTGGA ACACATCAAC TGGTCAATAA AAATGTAGTT
TTTAAAGACT TAGGTTTATT GATTGTCGAT GAGGAACAAA AGTTTGGAGT TAACGTAAAA
GATAAACTGA AAACCATTGC TGCAAATGTG GATACGCTGA CATTAACTGC AACGCCAATT
CCGAGAACTT TGCAGTTTTC ATTAATGGCT GCGCGGGATT TATCGGTAAT TACAACGCCT
CCACCAAACC GTTATCCAAT TGAAACCAAT GTGGTTGGTT TTAATGAAGA AATTATTCGT
GACGCGATTT CATATGAAAT TCAGAGAAAC GGGCAAGTCT TCTTTATCAA TAATAGAATT
GAAAACATAA AAGAAGTGGC TGGAATGATT CAGCGTTTGG TTCCAAATGC AAGAGTTGGA
ATTGGCCACG GACAAATGGA CGGTGCCAAA CTTGAGGAAT TGATGTTAGG TTTTATGAAC
GGAGATTTTG ATGTTTTGGT AGCAACCACA ATTATCGAAA GTGGTTTGGA CGTTCCAAAT
GCAAATACGA TTTTCATCAA CAACGCTAAT AATTTCGGAT TATCAGATTT GCATCAAATG
CGAGGCCGAG TAGGGCGAAG CAATAAAAAA GCATTTTGTT ATTTCATCTG TCCTCCGTAT
TCATCAATGA CCGAAGATGC CAGAAAACGC ATTCAGGCGT TGGAACAATT CAGTGAATTA
GGAAGCGGTT TCAACATTGC GATGAAAGAT CTTGAAATTC GAGGCGCGGG AGATTTATTG
GGCGGAGAAC AAAGCGGTTT CATTAATGAA ATTGGTTTTG ATACGTACCA GAAAATTATG
AATGAAGCCA TTGAAGAGTT GAAGGAAAAC GAATTCAAAG ATTTATATCC TGAAGAAAAT
GATATTGATA CCAAAGAATA TGTAAAAGAC ATTCAAATCG ATGCCGATTT TGAGCTTTTA
TTCCCGGATG AATATATCAA TAACGTTTCA GAACGTTTGG TTTTATACAA CGAATTAGGC
GCTATAAAAG ACGAAGCAGG ATTACAGGAA TTTGAAAGAA AACTAATTGA CCGTTTCGGG
CCTTTGCCAA AACAAGCGAC AGCATTGTTA AACAGCATTA GAATAAAATG GATTGCAACA
AAAGTCGGAA TCGAGAAATT AGTCTTGAAA CAAGGCAAAA TGATTGGCTA TTTCGTATCC
GATCAGCAGT CAGATTATTA TCAGTCTGTG AAGTTTAGAA ACGTCCTGAA CTTTGTTCAA
AAACATAGTT CGCTCTGCAA AATGAAAGAA AAACAAACTG TAAACGGATT ACGTTTATTG
TTGACTTTTG AAAATGTGAA GTCGATAAAA CGAGCTTTAG AGTTAATGGA ATTGTTTGAG
GAGTAG
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| Protein sequence | MSKNVLYTTY DNLPKAQQIA SGLLEGNQIK MNISGLLGSA VSFIIRSVFK KTELPFLIVL
DNKEEAAYYL NDLEQMIGEQ DVLFYPVSFR RPYQVDETDN ANVLLRAEVL NRINSRKKPA
VIVTYPEALF EKVVTRQQLD KNTLKVSLND KISIDFINEV LFEYEFKRVD FITEPGEFSV
RGGIVDVFSF SNDHPYRIEF FGNEVDSIRT FDVETQLSVE THKKITIIPN VENKIFQENR
ESFLDYIAEK TVLFIQNTEG LFSQLDKQFA RAEEAFEKLS KEIKHAAPEQ LFLNQASFIK
RALDFSVVEL ASRPVFKTTK KFEFHIQPQP SFNKQFDLLL NNLSDNHFNG YVNYLFCSNE
TQAKRFHDIF ESLDEANSEN IRKHYHTIVL PLYQGFIDEE NQITAYTDHQ IFERYHKFNI
KNGYSKKQNI TLKELTALSV GDYVTHIDHG IGKFGGLQKI QVEGKTQEAI KLVYADNDIV
YVSIHSLHKI SKYNGKDGTP PKIYKLGSNA WKVLKQKTKA RVKHIAFNLI QLYAKRRLEK
GFQFAPDSYL QNELESSFIY EDTPDQMKST QEVKADMESD RPMDRLVCGD VGFGKTEVAI
RAAFKAVDNS KQVAVLVPTT ILAYQHYRTF SERLKDMPVS IGYLNRFRTA KQKTQTLKDL
AEGKLDIVIG THQLVNKNVV FKDLGLLIVD EEQKFGVNVK DKLKTIAANV DTLTLTATPI
PRTLQFSLMA ARDLSVITTP PPNRYPIETN VVGFNEEIIR DAISYEIQRN GQVFFINNRI
ENIKEVAGMI QRLVPNARVG IGHGQMDGAK LEELMLGFMN GDFDVLVATT IIESGLDVPN
ANTIFINNAN NFGLSDLHQM RGRVGRSNKK AFCYFICPPY SSMTEDARKR IQALEQFSEL
GSGFNIAMKD LEIRGAGDLL GGEQSGFINE IGFDTYQKIM NEAIEELKEN EFKDLYPEEN
DIDTKEYVKD IQIDADFELL FPDEYINNVS ERLVLYNELG AIKDEAGLQE FERKLIDRFG
PLPKQATALL NSIRIKWIAT KVGIEKLVLK QGKMIGYFVS DQQSDYYQSV KFRNVLNFVQ
KHSSLCKMKE KQTVNGLRLL LTFENVKSIK RALELMELFE E
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