| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_0538 |
|---|
| Symbol | |
|---|
| ID | 5089484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 568858 |
|---|
| End bp | 569919 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 644739937 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001192892 |
|---|
| Protein GI | 146298301 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.214837 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATACCG GCAAAGAACT TCTATTCTTT TTTAGTGCTT TGGGATCTTT CAACGGAATT
ATTCTGGGAG TTTATTTTTT CTTTTTTACG AAGAAAAAAT TCCTCACAAA TTATTTCCTG
GGCGCACTCT TGTTCGCTTT AAGCATCCGA ATTGGGAAAT CTGTTTTTAT TTATTTTCAT
CCCGAACTGC CAAAAATGTA TTTGCAGTTA GGACTTACTG CTTGTTTTTT TATTGGTCCT
TGTTTGTATT ATTTTTTAAG ATCGGCAGTT GAAGAAATCA ATGTAATGCC AAAATCGTGG
AAAATGATGC TGCTGTTTTG GGGAATCCTG ATTGTGAGTG TCGGAATCCT ATATCCGTAC
GAAATGTATC CAACACTTTG GAGCTTTTAT TTTATTCGGA TTATTTACTT TCAATGGTTT
GTATATATCC TATTTTCAGG ATTTACAATT CGCGGCGTTT TAAAGAAAAT TTTCAATACT
AAAGAAAAAG CAAGTCCGTC AGAAATTTGG TTTGGAACCC TTTTTCTCGG CACTTTTTTA
TTATTCCTTT TTTACTTTTT GGCCATTATG GGCGCTTCGG CAGCAACTTA TATAAGCGGT
GCCGTTGTTT TCTCTTTTAT TTTATATCTG ATTATTTCTA TTCTTTTATA CCGAAAGAAA
ACCGATGATT TGTTTCTGCT GAACAGTCAG AAGGTTTCAG GCAAAAAAAT CGATGCAGCC
GAAGCTGTGA TTATTTCTGA AAAATTAGAA AATATAATGA ACGAAAAAAG CCTGTATAAA
AACCCAAACC TGAATTTGCA GGATTTGTCG AGAGAAATTA ATATTTCGAG CCATCAATTA
TCGCAGTTTT TAAATAATAA TCTGGGAAAG AACTTTACCA GTTTTGTAAA CGAATTTAGA
ATAAACGAAG CCTGCAGAAT TATCACTTCA AATGATAAAC TGACTTTAGA ATCTGTTGGT
TACGATGTGG GATTTAATTC AAAATCGACA TTTTTTGCTG CTTTTAAAAA ACATACCGGA
ACAACACCTT TAAATTATCA GCTTCAGGCT TTACAAACAT AA
|
|---|
| Protein sequence | MDTGKELLFF FSALGSFNGI ILGVYFFFFT KKKFLTNYFL GALLFALSIR IGKSVFIYFH
PELPKMYLQL GLTACFFIGP CLYYFLRSAV EEINVMPKSW KMMLLFWGIL IVSVGILYPY
EMYPTLWSFY FIRIIYFQWF VYILFSGFTI RGVLKKIFNT KEKASPSEIW FGTLFLGTFL
LFLFYFLAIM GASAATYISG AVVFSFILYL IISILLYRKK TDDLFLLNSQ KVSGKKIDAA
EAVIISEKLE NIMNEKSLYK NPNLNLQDLS REINISSHQL SQFLNNNLGK NFTSFVNEFR
INEACRIITS NDKLTLESVG YDVGFNSKST FFAAFKKHTG TTPLNYQLQA LQT
|
|---|
| |