| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2221 |
|---|
| Symbol | |
|---|
| ID | 5104282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 2128292 |
|---|
| End bp | 2129107 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640508114 |
|---|
| Product | ribulose-1,5-biphosphate synthetase |
|---|
| Protein accession | YP_001192283 |
|---|
| Protein GI | 146304967 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1635] Flavoprotein involved in thiazole biosynthesis |
|---|
| TIGRFAM ID | [TIGR00292] thiazole biosynthesis enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000384751 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACATAA AGCAAGTAGA TGAGATCAAA ATAACAAGAT ATATTCTAAA GGCCACATTT
GAGGATTGGA TGGATTTTTC AGTTAATGAT GTAGTAATTG TAGGAGCAGG TCCCTCTGGG
CTAGCTGCTG CATATTATTC AGCCAAGGCT GGGCTAAAAA CTACGGTGTT TGAGAGAAGG
CTTAGTTTTG GTGGGGGTAT CGGAGGAGGG GCAATGTTAT TCCATAAGAT AGTGATTGAA
AGTCCTGCAG ACGAGATATT GAGGGAAATA GGAGTGAAAT TACAAAAGTT TGAGGAAGGT
GTTTACGTTG TGGATAGCTC TGAATTTATG GCTAAACTAG CGGCAGCTAC TATTGATGCA
GGAGCTAAAA TTATTCACGG GGTAACAGTA GATGATGTGA TATTCAGGGA AAATCCCCTT
AGGGTGACAG GTGTAGCCGT GGAATGGACA GCTACTCAGA TGGCAAGTCT TCACGTAGAT
CCTCTTTTCA TATCTGCCAA GGCAGTGGTA GACGCCACTG GACATGACGC TGAAGTAATA
TCTGTCGCAT CAAGGAAAAT CCCCGAACTT GGAATAGTTA TACCTGGCGA GAAATCAGCT
TACAGCGAAA TCGCTGAGCA ACTAACTGTG GAGCAGTCTG GCGAAGTCGC GCCTGGACTC
TATGCAGCCG GTATGGCTGT AACGGAAATT AAGGCAATAC CTAGAATGGG GCCCATATTT
GGTGCCATGC TACTTTCAGG GAAAAAGGTT GCCGAGGATA TAATAAAGAA TCTTCAGGCC
AACTCCGCAA CACTTAAATC CGTCCAAAAA GAGTAA
|
|---|
| Protein sequence | MNIKQVDEIK ITRYILKATF EDWMDFSVND VVIVGAGPSG LAAAYYSAKA GLKTTVFERR
LSFGGGIGGG AMLFHKIVIE SPADEILREI GVKLQKFEEG VYVVDSSEFM AKLAAATIDA
GAKIIHGVTV DDVIFRENPL RVTGVAVEWT ATQMASLHVD PLFISAKAVV DATGHDAEVI
SVASRKIPEL GIVIPGEKSA YSEIAEQLTV EQSGEVAPGL YAAGMAVTEI KAIPRMGPIF
GAMLLSGKKV AEDIIKNLQA NSATLKSVQK E
|
|---|
| |