| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2167 |
|---|
| Symbol | |
|---|
| ID | 5104906 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 2083547 |
|---|
| End bp | 2086024 |
|---|
| Gene Length | 2478 bp |
|---|
| Protein Length | 825 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640508060 |
|---|
| Product | RND superfamily drug efflux protein |
|---|
| Protein accession | YP_001192230 |
|---|
| Protein GI | 146304914 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2409] Predicted drug exporters of the RND superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00341827 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACATC TCGCCATCGC ATGGATAGTT CTGATGGTAA TACTTGCTCC AGTGGTACTT
CAGGTGCAAA ACTATTTCGT TTACAGCGAT TCGCCCTTTC TTTCTTCCAC TTATCAAAGT
ATTGTCGTAG AGAACCTAGT TAAGGATTAC TTTAACCTGT CCCAGACGTC ATATAGCGAG
ATATATGTCA TCGTTAATGG CTCTTACAAT GAGTCATTAG ATTCGGTGGA GAGTAACTTA
CATTATCTTC AAGATGCAAG GATAATAACT CCTTACGAGA TAATATCCCA GTATCAACAA
CAGTACCTAC AACAGGTATC TCCTCTGATC AATAGTACTG AGGCAAAGCT ACTTCGGGTA
CATCAACTTT ACTTAAATCT CACAGAGCTC AGGAACGCAC TTCTAGACAA CATATCCAAT
TTCATGTGCC AGTTAAACGT GACTTATGGA GTCCCTCTAG GGAAAAACGT GAACGCACCG
GCGAACGTTA TCTCCACGTA TAAGACCTAT TACTTTCTGG CGTTGCAAAA CCTTTCCCAG
ATAAACGCGT CGAGACTAGC TGGTTACCTA ACCTTTAAGG ACCCTTACGT TATCTTCTTT
GGTTATAACA ATTACACAAA CGAAACCTTG GTTAGGCAGT TCCTTCTTAA CTTCAACAAT
TACTCTATCC TTATCCGCTT GCTCACCGGT GAGGACTTAC CACCATTGGC CTATGAGAAT
CCGCACGAGT ACGCCGTTCA GCTTGTGGAG AGGGAGGTGC CACAACCTGG AGTATCCTTG
TCCTATTTCC ACAGGAACAA CTCCTGGCTC TTCATAGTCC AAGTTCCCAG GAACGAGAGT
CTGAGCAGTA TCAATATCTT CATGGAGAAT CTTCACGGAG TTGTCACAGG CCATCTTCCA
ATCTATGCCC AGTCTGAACT ATATACTGAG CAGAACTTGA GGATAATTGA CGTAGTCACG
GTGACCTTAG TTGGGGTCCT ACTCATTCTG TTACTTAGAT CACTTGTTCC CATTCTCTTG
CTCGTGGGTA GTGCATTAAT AGGCGTAGAG GTCGCATACG CGTCTCTCCT GGGACTGAGG
TTGCTGGGTT ATCAAATTTA CTATATTTCA GGTCTGGTCA TACCCCCCAT AGTGTTCGGA
ATAGCGATTG ACTATTCTCT CCTCTTTATC TACAGGTATT TTGAGGAATT GAGAGCAGGA
TCAAAGAATC CCTTAACGAC TGCATTTAGG ACGGCGGGGA GGGGCGCACT CTTTAGCGGA
CTCTCCATTA CCCTAGCCTT CGCCTCATTC CTTCTTTCTC CGTCTCCCCT GCTTAGGAAT
ATAGGGATAG CCCTAGTCCT AAGTTCCGTT TTTTCCCTCC TTCCCTCCAT AGGATTTACT
TATACGACCC TAAGGGAAAT CAGTGTCAGA GCCCTTTCCT TCCCCAGAAG GGAGATTCCA
AATCCTTCTG ACTCGAGGAG CAGGTATTTG AGGTTCATGG TCAATCTGTC CATAAGACGG
AAGTATCTAG TGGTAGTTTT CATGGTAATA TCCTCGGTTC TAGCCATGGG AGTGTTCCTA
ACCCATACCA CCAACATAAA CGCGAACGAG ATTGTACCTT CCTTCTCAGA GTCCCTGGTA
GGGCTAAACG AGTTGACGAG ATTCTTCAAT TACAGCCTGG ACTACGCTAT CATCAAGGGA
AATCCAAACT CGACCTATTC CTTCATCTAC AACGTTTCTG CCCAGGCAAT CTCAAGGGGA
GCACTGGTTT ATGGTCCAGC CTCCCTTGGT AAGGTCGCTT TCAGCGAACC CACAGCTTTA
ACTAACAAGT TTTACTCTCA CGGATACACC CTCGTGGAGT TCTATGTTCC CTACCCCGTG
TTCAGCGACG GGGCCATAAA TTTCACCACT TGGCTCATAT CCAAGGGTCT CCAGGTAGGG
GGTAGCAACG CGCAGAGGAT AGATATCGTC TCTAACACGG TTCACGTTTA CTACTCCCTA
ACCCTGCCCC TCACAATCCT TTTCATTCTA GTGTACCTTG GCGTCTTGCT AAGGTCGGTG
GCGCTACCCA TTAGGCTGGT ACTGTCCCTT CTTTTCAGCT CACTTGTGGG GGTTGCGGTA
ATGTTTCTGG TCTTTGGAAG TGTTTACTGG CTTTCTCCGC TCATCGTGTT CGCTCTACTC
TTCAGCCTGG GGATAGACTA TGACATGTTC ATTGTGCTTA GGATAAGGGA AGAGCAGGGA
ACAGAGGATG AGAGGATAAG GAAGGGAGTT GAGAAGACTG GCCTAGTAGT TACTGCAGCC
GGCCTTGTGT TAACTGGAGC ATTCATCTCC CTCACTGCCG TGAACATGCA ATTCCTAAGG
GAGATAGGGT TTGCAGTGGG CTTCTCCATC CTGTTTGACA CGTTTATAGT CAGGCCCTTC
ATAGTTCCTG CGGTAATGTC AATACTTGGG AAGTATAATT GGTGGCCGGG CGTTAGGAGG
ACTCGCAACA AAGCTTAG
|
|---|
| Protein sequence | MKHLAIAWIV LMVILAPVVL QVQNYFVYSD SPFLSSTYQS IVVENLVKDY FNLSQTSYSE
IYVIVNGSYN ESLDSVESNL HYLQDARIIT PYEIISQYQQ QYLQQVSPLI NSTEAKLLRV
HQLYLNLTEL RNALLDNISN FMCQLNVTYG VPLGKNVNAP ANVISTYKTY YFLALQNLSQ
INASRLAGYL TFKDPYVIFF GYNNYTNETL VRQFLLNFNN YSILIRLLTG EDLPPLAYEN
PHEYAVQLVE REVPQPGVSL SYFHRNNSWL FIVQVPRNES LSSINIFMEN LHGVVTGHLP
IYAQSELYTE QNLRIIDVVT VTLVGVLLIL LLRSLVPILL LVGSALIGVE VAYASLLGLR
LLGYQIYYIS GLVIPPIVFG IAIDYSLLFI YRYFEELRAG SKNPLTTAFR TAGRGALFSG
LSITLAFASF LLSPSPLLRN IGIALVLSSV FSLLPSIGFT YTTLREISVR ALSFPRREIP
NPSDSRSRYL RFMVNLSIRR KYLVVVFMVI SSVLAMGVFL THTTNINANE IVPSFSESLV
GLNELTRFFN YSLDYAIIKG NPNSTYSFIY NVSAQAISRG ALVYGPASLG KVAFSEPTAL
TNKFYSHGYT LVEFYVPYPV FSDGAINFTT WLISKGLQVG GSNAQRIDIV SNTVHVYYSL
TLPLTILFIL VYLGVLLRSV ALPIRLVLSL LFSSLVGVAV MFLVFGSVYW LSPLIVFALL
FSLGIDYDMF IVLRIREEQG TEDERIRKGV EKTGLVVTAA GLVLTGAFIS LTAVNMQFLR
EIGFAVGFSI LFDTFIVRPF IVPAVMSILG KYNWWPGVRR TRNKA
|
|---|
| |