| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2050 |
|---|
| Symbol | rfc |
|---|
| ID | 5105030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1972410 |
|---|
| End bp | 1973390 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640507940 |
|---|
| Product | replication factor C small subunit |
|---|
| Protein accession | YP_001192114 |
|---|
| Protein GI | 146304798 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGATG AAATATTATG GGCCGAAAAG TACAGGCCTA GAAGTTTAGA TGATATCGTG
AACCAAAGGG ACATCGTGGA GCGTCTGAAA CACTTCGTTA AGGAAAAGAA CATGCCTCAC
TTGCTGTTTG CTGGACCTCC AGGGACAGGT AAAACTACCT CAGCCTTGGC GTTGGTTCAT
GACCTATATG GCGAGAACTA TGAGCAATAT CTTCTCGAGC TGAACGCCAG TGATGAGAGG
GGTATAGACG TGATCAGAAA TAAGGTAAAG GAGTTCGCAA GAACAGTGAC CCCGGGTAGC
GTTCCCTTCA AGACCGTGTT ACTGGACGAG GCTGATAACA TGACTGCGGA TGCGCAACAG
GCATTGAGGA GAACCATGGA GCTCTACACC GAGACCACCA GGTTCATACT TGCCTGTAAC
TACCTGAGTA AGATTATAGA TCCGATCCAG TCCCGTACCG CTCTCTTTAG GTTCTACCCA
CTCAAAAAGG AGGACGTAAT ATCAAGGCTA GAATTCATCA TGAAGCAGGA GGGGGTACAA
TACGATCCTA AGGCGCTTGA CGTGATATAT GATGTGACCA ATGGGGACAT GAGAAAGGCA
ATCAACGTGC TTCAGGCAGC CTCAGCCTAC GGCAAGGTGA CGCAGGAGGC AGTCTTCAAG
GTACTGGGAC TGGCCCAGCC TAAGGAAGTT AGGGACATGG TGAAGCTGGC ACTTCAAGGT
AGATTCATGG ACGCTAGGTC GAAGTTACTC TCCTTGATTA TCAATTACGG TCTCTCTGGA
GAGGATATTG TTAAACAGGT TCACAGAGAT ATATTCTCAA ATGAGTATCA AATACCAGAA
GAGCTCAGGG TTTTGCTGAC GGATTACATA GGGGAGGTTG AGTTCAGGAT AATAGAGGGG
GCAGATGACG AAATACAACT GTCTGCAATG CTGGCAAAAC TGGCCCTTCT AGGTCAGAAG
TATTTAGGCG AGAAGAAATG A
|
|---|
| Protein sequence | MMDEILWAEK YRPRSLDDIV NQRDIVERLK HFVKEKNMPH LLFAGPPGTG KTTSALALVH
DLYGENYEQY LLELNASDER GIDVIRNKVK EFARTVTPGS VPFKTVLLDE ADNMTADAQQ
ALRRTMELYT ETTRFILACN YLSKIIDPIQ SRTALFRFYP LKKEDVISRL EFIMKQEGVQ
YDPKALDVIY DVTNGDMRKA INVLQAASAY GKVTQEAVFK VLGLAQPKEV RDMVKLALQG
RFMDARSKLL SLIINYGLSG EDIVKQVHRD IFSNEYQIPE ELRVLLTDYI GEVEFRIIEG
ADDEIQLSAM LAKLALLGQK YLGEKK
|
|---|
| |