Gene Msed_2008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_2008 
Symbol 
ID5103395 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1941040 
End bp1941465 
Gene Length426 bp 
Protein Length141 aa 
Translation table11 
GC content47% 
IMG OID640507896 
ProductUspA domain-containing protein 
Protein accessionYP_001192072 
Protein GI146304756 
COG category[T] Signal transduction mechanisms 
COG ID[COG0589] Universal stress protein UspA and related nucleotide-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTAAAC ATATTTTAGT TGCATTTGAT GGGTCCGAGA ACGCCAAGAG GGCCCTAAAT 
GTAGCGGTAG ATCTTTCAAA GAAGTACGAA GCAAAACTGG ACGTGGTGGA AGTGGTAGAT
ACTTCGGTGC TCCTTGGTGC GGGCATAGGT CCAGTGCCAC CTGATGTAAT AGAGTCCCTC
TATAACAAGG CTAGGGCTGA TATAGAGTCG GCAAAGAAGA TAGCGGATCA GGCAGGAGTT
AAGGCTGAAG GCGTAATAGT TGAGGGAGAT CCTGCCACAG CGATCATGGA TTATGCCTCC
AAGAACGGAG TTGATCTCAT AGTTACTGGT AGCAGGGGTT TATCCACGAT CAAGAGGATG
TTCCTAGGTA GTGTGTCCTC TAGGATAATC CACGAGGCTA AGATGCCTGT ACTCGTGGTA
AAGTAA
 
Protein sequence
MFKHILVAFD GSENAKRALN VAVDLSKKYE AKLDVVEVVD TSVLLGAGIG PVPPDVIESL 
YNKARADIES AKKIADQAGV KAEGVIVEGD PATAIMDYAS KNGVDLIVTG SRGLSTIKRM
FLGSVSSRII HEAKMPVLVV K