Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_2008 |
Symbol | |
ID | 5103395 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 1941040 |
End bp | 1941465 |
Gene Length | 426 bp |
Protein Length | 141 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640507896 |
Product | UspA domain-containing protein |
Protein accession | YP_001192072 |
Protein GI | 146304756 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTAAAC ATATTTTAGT TGCATTTGAT GGGTCCGAGA ACGCCAAGAG GGCCCTAAAT GTAGCGGTAG ATCTTTCAAA GAAGTACGAA GCAAAACTGG ACGTGGTGGA AGTGGTAGAT ACTTCGGTGC TCCTTGGTGC GGGCATAGGT CCAGTGCCAC CTGATGTAAT AGAGTCCCTC TATAACAAGG CTAGGGCTGA TATAGAGTCG GCAAAGAAGA TAGCGGATCA GGCAGGAGTT AAGGCTGAAG GCGTAATAGT TGAGGGAGAT CCTGCCACAG CGATCATGGA TTATGCCTCC AAGAACGGAG TTGATCTCAT AGTTACTGGT AGCAGGGGTT TATCCACGAT CAAGAGGATG TTCCTAGGTA GTGTGTCCTC TAGGATAATC CACGAGGCTA AGATGCCTGT ACTCGTGGTA AAGTAA
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Protein sequence | MFKHILVAFD GSENAKRALN VAVDLSKKYE AKLDVVEVVD TSVLLGAGIG PVPPDVIESL YNKARADIES AKKIADQAGV KAEGVIVEGD PATAIMDYAS KNGVDLIVTG SRGLSTIKRM FLGSVSSRII HEAKMPVLVV K
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