| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2003 |
|---|
| Symbol | |
|---|
| ID | 5103390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1936367 |
|---|
| End bp | 1937320 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640507891 |
|---|
| Product | homoserine dehydrogenase |
|---|
| Protein accession | YP_001192067 |
|---|
| Protein GI | 146304751 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0460] Homoserine dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCCA ATAGCTTACG GGTCCTCCTG GTAGGATATG GTAATGTGGG TAAGGCCCTC
AGGAAGATGG TCAGGGAGAG GGCACCCTCA CTGGGTTTGA ACGTAAGGAT AGAGGGAATT
GTCACCAGGA GAGGCATTAT GCTAGGAGAC TCGGAGGAGT TTAGAAAAAC CAAGGATGGA
ACTCCCATTG ACGCCCTAAA TGAGGTGAGC CCTGACCTAG TGATTGACGT AAGTTCCGCC
AATTACGAGA CAGGAGAGCC CTCCTTCTCC CTTTACATGG AGGCTTTATC AAGGGGTATT
GCGGTGATCA CGGCGAACAA GGCTCCCCTT GCCCTTAAGT ACGCGGAGAT CGTGGCTCAA
GCTAAAAAAC ATGGCGCCTT CCTTGGGTTT CAGGCAACAG TGATGAGCGG GACCCCCTCC
ATAAACCTTC TTCGCCTGTT GAGGGGTTCA ACCATCCTGA AGATAAGGGG TATCCTGAAC
GGTACCACGA ATTATATCCT CACTAGAATG GATCAGGGAC TTGAGTACTT TCAGGCCTTA
AGGGAAGCTC AGGAAAAGGG ATACGCTGAG GCAAACCCGG AGCACGACGT GAATGGATTT
GACGCTGCAG CTAAACTAAC TATCTTAACC AATTTCGCAA TGGGTAGAAA TATCTCGATC
AGGGATGTCG ACTTTTCCGG AATAGCTAAC GTTACACTCT CAAGGATTGA AGAGGCTAAA
CGTAGATCAA GAAAGCTCAA GTTAGTTGCT GTCTCGGAGG GTAAAACAAG TAAGGTTAGC
CTGACCGAGG TATCTCCTGA GGATCCGCTG TATCATGTGG ACGGAGTAAT CAACACGCTA
GACATTCACT CTGACATACA GGAAGTAGTT ATTACAGGAC CTGGGGCTGG TCCACAGAAC
GCGGCCTTTG GTGTGTTCTC GGATATAGTA CTAATGAGCA ATGGTTTGAT TTGA
|
|---|
| Protein sequence | MKSNSLRVLL VGYGNVGKAL RKMVRERAPS LGLNVRIEGI VTRRGIMLGD SEEFRKTKDG
TPIDALNEVS PDLVIDVSSA NYETGEPSFS LYMEALSRGI AVITANKAPL ALKYAEIVAQ
AKKHGAFLGF QATVMSGTPS INLLRLLRGS TILKIRGILN GTTNYILTRM DQGLEYFQAL
REAQEKGYAE ANPEHDVNGF DAAAKLTILT NFAMGRNISI RDVDFSGIAN VTLSRIEEAK
RRSRKLKLVA VSEGKTSKVS LTEVSPEDPL YHVDGVINTL DIHSDIQEVV ITGPGAGPQN
AAFGVFSDIV LMSNGLI
|
|---|
| |