Gene Msed_1955 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1955 
Symbol 
ID5103342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1897144 
End bp1897449 
Gene Length306 bp 
Protein Length101 aa 
Translation table11 
GC content45% 
IMG OID640507843 
ProductDNA-directed RNA polymerase, subunit M 
Protein accessionYP_001192019 
Protein GI146304703 
COG category[K] Transcription 
COG ID[COG1594] DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAGTTCT GTCCAAAGGA TGGAGGTATA ATGCTACCTG CGAAGAAGGG TGACAAGGAA 
ATCCTGAGAT GTAAGAAGTG CGGATATGAG GAACCATTGG ATAAAAAGAC GAGGAAAGCA
TATCAGATAA AGGAGGATAA GTCCAAGTCC GGGAAAGTGT TAACTACGTC CATCGTAAGC
GAGAAGGAAG GTAGAAGGAG AGAAGACGAT GAATGGGAGC AGGAGAGGGA GGAGTACTAT
AAGGAAATTG GCCTGGATTT GTTGAGGGAT GAATTAGAGG GTTCGGAAGA GCACGAAGAG
GAATAG
 
Protein sequence
MKFCPKDGGI MLPAKKGDKE ILRCKKCGYE EPLDKKTRKA YQIKEDKSKS GKVLTTSIVS 
EKEGRRREDD EWEQEREEYY KEIGLDLLRD ELEGSEEHEE E