Gene Msed_1930 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1930 
Symbol 
ID5103317 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1876922 
End bp1877416 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content42% 
IMG OID640507818 
Productmagnesium-dependent phosphatase-1 
Protein accessionYP_001191994 
Protein GI146304678 
COG category[R] General function prediction only 
COG ID[COG4996] Predicted phosphatase 
TIGRFAM ID[TIGR01681] HAD-superfamily phosphatase, subfamily IIIC
[TIGR01685] magnesium-dependent phosphatase-1 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.406995 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAAAC TAGTGATATT TGATGCCGAT AAAACCCTCT GGGATCACTA CAATATCTCA 
GAGTTTGAGG AACCTTTTCA TTTACCAGAG AGAGATATCC TAAGGGATAG CGAAGGAAGA
ACGCTCAAGC TTTTCCCCAA TGTTAGGAAA ACACTGGAAG AGTTGAAAAG AAAAGACGTT
AAGATTGCTA TGGCCACTTG GAACTTCCCC CATAAAACGG AAAAGGTATT GAAAGCTCTA
GAACTCGACA GCTATTTCGA CGTCGTAGTC TCCAGGGATT TTCCGTTCAA GTTCATAATG
ATCGCGGAAA TCCTCAGGAA GTTTGCTGAG AGCGGTATTC GATTTAGACC CGAGGAGATT
CTCTTTGTCG ATGATAGGAG GGCACATTTC GGTAATGTGT GGCTTTACCT AGGGAGAATT
CAATGCCTCG AAATGTGGAA AGACATAAAC GATCACCTCG AGATAATCTC AAAATTGGAA
AATAGTCAGA CATGA
 
Protein sequence
MIKLVIFDAD KTLWDHYNIS EFEEPFHLPE RDILRDSEGR TLKLFPNVRK TLEELKRKDV 
KIAMATWNFP HKTEKVLKAL ELDSYFDVVV SRDFPFKFIM IAEILRKFAE SGIRFRPEEI
LFVDDRRAHF GNVWLYLGRI QCLEMWKDIN DHLEIISKLE NSQT