| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1873 |
|---|
| Symbol | |
|---|
| ID | 5104141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1816146 |
|---|
| End bp | 1817318 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640507759 |
|---|
| Product | chorismate synthase |
|---|
| Protein accession | YP_001191937 |
|---|
| Protein GI | 146304621 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0082] Chorismate synthase |
|---|
| TIGRFAM ID | [TIGR00033] chorismate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.485609 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGGAA ATAGCTTTGG CAAGATCTTT AGGATTACCA CTTTCGGGGA AAGCCACGGG
CCCGCGGTGG GCGTCGTGGT GGACGGTGTC CCTGCAGGGT TAAGGTTGTC CCAGGAGGAT
CTTGAATTCG AGCTCTCCTT CAGGAGACCA GGGAGACTCT ACGTGTCAGG GAGAAGGGAG
AAGGACGTTC CCGAGATCCT GAGTGGGGTC TATAATGGAA GGACCACTGG GTCTCCCATT
GCCATCGTCG TGAAAAACAC TGATGTTATC TCGTCGTTCT ATGAGGAGGT TAAGGTGAAG
CCAAGGCCTG GACACGCTGA CCTTCCCTTC ATCATGAGGT ATGGTTACGA AAACTGGGAC
TACAGGGGAG GTGGCAGATC GAGCGCCAGG GAGACCGTTG GGAGAGTAGC TGCAGGGGCG
ATAGCCAAGA AGCTGTTAAT GTTCCACGAT ACCTGGATAG CGGGGAGGCT CAAGAGTCTT
GGACCTGTGG ACTCACCGCC CGCGGACTTC CTTCAAATCT TATGTTCCAA GTACAGCCCC
GTGAGGGCTT CCGACCCAGA GACTGAGGCC AAGTTCCAGG AACTGGTGAA ACAGGCAACG
GTTGAGGGAG ATAGTTACGG TGGAGTTGCC GAGATAGTCG TGAAGAACCC ACCTGCAGGG
TTAGGTGAAC CTGTCTTCGA CAAGATCAAG GCTGACCTGG CCAAGGCGAT CCTCTCTATC
CCGGCAGTGA CGGGGTTTGA GTACGGACTG GGCTTTCAAG CTTCAAGAAT GAAGGGAAGC
GAGGCAAACG ACTCCATTGT AAGGAAGGGT GAGAGACTTG GTTGGAGGGA GAACAAGTCT
GGCGGAATCC TGGGAGGAAT AACTACGGGT GAGGATATAG TGGTGAGATG TTCCTTCAAG
CCCACAAGCT CCATAAGGAA ACCGCAGGGG ACGGTGGATC TAAGAACCGG GGAACCGGCA
GAGATCTCTG TCCTGGGAAG GCATGATCCA GCTGTCGCAA TCAGGGGAGT CTCCGTGGCT
GAGTCCATGG TGGCCCTGAC CCTGGTGGAT CACTCCCTGA GGTCTGGGGT CATCCCACCT
GTCAAGCTCG AGGAGAGGCA GGCTGAGGTC ATTGAGGACA GATGGAGGAG GTACATGGAG
GAATGCAGGC CTACGGCGGA ATCTCAGTCG TGA
|
|---|
| Protein sequence | MPGNSFGKIF RITTFGESHG PAVGVVVDGV PAGLRLSQED LEFELSFRRP GRLYVSGRRE
KDVPEILSGV YNGRTTGSPI AIVVKNTDVI SSFYEEVKVK PRPGHADLPF IMRYGYENWD
YRGGGRSSAR ETVGRVAAGA IAKKLLMFHD TWIAGRLKSL GPVDSPPADF LQILCSKYSP
VRASDPETEA KFQELVKQAT VEGDSYGGVA EIVVKNPPAG LGEPVFDKIK ADLAKAILSI
PAVTGFEYGL GFQASRMKGS EANDSIVRKG ERLGWRENKS GGILGGITTG EDIVVRCSFK
PTSSIRKPQG TVDLRTGEPA EISVLGRHDP AVAIRGVSVA ESMVALTLVD HSLRSGVIPP
VKLEERQAEV IEDRWRRYME ECRPTAESQS
|
|---|
| |