| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1872 |
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| Symbol | |
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| ID | 5104140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1815397 |
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| End bp | 1816197 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640507758 |
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| Product | shikimate kinase |
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| Protein accession | YP_001191936 |
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| Protein GI | 146304620 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG1685] Archaeal shikimate kinase |
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| TIGRFAM ID | [TIGR01920] shikimate kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.464279 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAGGAGG TACATGGAGG AATGCAGGCC TACGGCGGAA TCTCAGTCGT GAACGCCTTA
CCCTCTTGGT ACGGCTCTGC CATGGCAGTG GACATGAAGG TTAACGTGAG GGTGAGGGAG
GGGAAGAGGA ACGTTCAGGA CCTACTCCTC AACGAGATAC TGAACTATTT CGAGAGGCAG
GGAATCCCGG AGCTCGAGGT GGAGGTTGAG TCGGAGATCC CTCCGGGAAG TGGGTTGAAG
AGTAGCAGTG CCGTTTCCAA TGCGTTAATA GGGGAGATAG CCGAGAGGTT CTCCTTGAAC
GTGGATATCC CCAAGCTATC AGCCATCCTC TCCCTCAAGG CTGGAGTCTC GTTCACGGGG
GCCTTGGACG ACGCTGTTGC CTCGTGGTGT GGAGGTGTCT CGTTCACGTA TAATAAGGAG
TTCAAGGTTA TCAAGAGGGA AAGGGCTCCC CGCGATGTGA CCGTGGTCAT CCTGGAGAGG
AGCGGGAAGG GAAAGATAGA TCTGGGTAAG TTAAGGGCCT TTAGGGCACT CTTCCAGGAG
ATCTTCGCGA TTGCCCTACA GGGAAGGTTG TGGGAGGCCA TGAAACTCAA CGGGATAGCC
ATAGCCGAGA TACTGGGCTT TCCTACGGAC CTGGTTGAGG AGGCTCTTCG TAAGGGGGCT
CTGGCCTCGG GGCTGTCAGG GAATGGACCC TCATATTTCG CCGTGACCCG TGAGGGCGAC
GAGGGGCCAG TTATTGAGGC CTTTGAGAAG AGGGGGAAGG TTAGGGTTAC CAGGGTGGTA
GACCTTGTTC GTGGAAATTG A
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| Protein sequence | MEEVHGGMQA YGGISVVNAL PSWYGSAMAV DMKVNVRVRE GKRNVQDLLL NEILNYFERQ
GIPELEVEVE SEIPPGSGLK SSSAVSNALI GEIAERFSLN VDIPKLSAIL SLKAGVSFTG
ALDDAVASWC GGVSFTYNKE FKVIKRERAP RDVTVVILER SGKGKIDLGK LRAFRALFQE
IFAIALQGRL WEAMKLNGIA IAEILGFPTD LVEEALRKGA LASGLSGNGP SYFAVTREGD
EGPVIEAFEK RGKVRVTRVV DLVRGN
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