| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1754 |
|---|
| Symbol | |
|---|
| ID | 5104754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 1689980 |
|---|
| End bp | 1691575 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640507649 |
|---|
| Product | DNA topoisomerase VI subunit B |
|---|
| Protein accession | YP_001191833 |
|---|
| Protein GI | 146304517 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1389] DNA topoisomerase VI, subunit B |
|---|
| TIGRFAM ID | [TIGR01052] DNA topoisomerase VI, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.259807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.193391 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCAGCTA AAGAGAAATT TACTAGCATC TCGCCGGCGG AGTTCTTCAA GAGGAACCCA
GAGCTAGCAG GTTTCTCCAA TCCGGCTAGG GCTATGTATC AAGCTCTAAG GGAATTGGTT
GAGAACGCGC TGGATGCAAC AGATGTCCAC GAGATTCTTC CGTCCATCAA GGTAATCATT
GAGAGAACCA GCCAGGAAAA AGAGATTTAC AGGCTCACTG TGGAGGACAA CGGAATAGGT
ATCCCACCGC ACGTAGTTCC TGACGCATTT GGAAGGGTGC TCTACAGCTC AAAATATGTA
CTGAGACAGA CCAGGGGAAT GTATGGGCTT GGTGTCAAGG CAGCCGTCCT CTACAGCCAG
ATGTATCAGG ACAAGCCTAT TGAAATAACC ACTGCCCCGC TCAACTCCAA GAGGATCTAC
AGCTTCAAGT TAAAGATAGA CGTAACAAAG AACGAGCCCA TCATCTACGA GAGAGGCTCA
GTGAATAACG ACACTGGCTA TCATGGTACT TCAGTCTCCA TGTACATTCT AGGGGACTGG
ATGAGGGCCA AGAGCAGGGT GTACGAGTAT ATAAAGAGGA CCTACATCAT CACCCCCTAC
GCCGAGTTTT ACTTTAAGGA TCCGGAGGGA AACGTGGTCC TATATCCTAG GCTCACCAAC
AAGATGCCAG TCCCTCCCAA GGAAGTGAAG CCCCATCCCT ATGGCGTTGA TATAGAGTTA
CTCAAGAACA TGATCTCGAG ACAGAAGGAG GACACAACGG TAAAGGAGTT CCTGGTGAAG
GAGTTTCAGA GTGTGGGAGA GAAAACAGCC CTTAGCGTAA TTGAAATGGC CGGATTGGAT
CCTGATAAGA GGGTCCAGAA GCTCACCGAT GACCAGCTTT CTAAGCTGGT AGATGCTATG
AAGAACTTCC CTGACTTTAG ACCCCCTTCA CCCGAGGCCC TTTCCACAAT CGGGGCCGAC
TTAATAGAAC TCGGCCTGAA GCAGACCTTC AACCCAGAGT ACGTCGGTGC AGTTACCAGG
AGACCTAAGG CCTATCAAGG CCACCCCTTC ATCGTGGAGG TTGGGCTTGC CTATGGTGGG
GATATTCAGC CCTCCGAGGA GCCCACGGTC CTGAGATACG CCAACAAGAT ACCCCTCATA
TACGACGAGA AATCTGACGT TGTATGGAAA GTTGTCGAGG AAATTGACTG GAAAAGGTAT
GGAATAGAGG ATGAACAGCT ACCCCTAGTG GTTATGGTTC ACCTCTGCAG TACCAAGGTG
CCGTACAAGA GCGCAGGTAA GGAGAGTATA GCTGATGTAG AGGAAATAGA GAAGGAGATA
AGGAACGGAA TAATGGAGGC TTCAAGGTCG CTTAAGACCT TTATGACAGA GAAGAGGAAG
GAGGAGGAGG CTAGGAAGAG GCTTCTAACC TACCTCAAGT ACATCCCAGA GCTTGCCAGG
TCGCTCTCCA TCTTCGTGAC GGATGGGAAA AAGGAGCTAG CTCCCAAGGT TCAGGAGGAA
ATACAAAACA AGATGATAGA CCTAGTGGTG ACTAAGCTTA ATATTAAAGA CAAAGATTTG
GAATTATTTA AGTCATATAG GGTTGAGACA CTATGA
|
|---|
| Protein sequence | MSAKEKFTSI SPAEFFKRNP ELAGFSNPAR AMYQALRELV ENALDATDVH EILPSIKVII
ERTSQEKEIY RLTVEDNGIG IPPHVVPDAF GRVLYSSKYV LRQTRGMYGL GVKAAVLYSQ
MYQDKPIEIT TAPLNSKRIY SFKLKIDVTK NEPIIYERGS VNNDTGYHGT SVSMYILGDW
MRAKSRVYEY IKRTYIITPY AEFYFKDPEG NVVLYPRLTN KMPVPPKEVK PHPYGVDIEL
LKNMISRQKE DTTVKEFLVK EFQSVGEKTA LSVIEMAGLD PDKRVQKLTD DQLSKLVDAM
KNFPDFRPPS PEALSTIGAD LIELGLKQTF NPEYVGAVTR RPKAYQGHPF IVEVGLAYGG
DIQPSEEPTV LRYANKIPLI YDEKSDVVWK VVEEIDWKRY GIEDEQLPLV VMVHLCSTKV
PYKSAGKESI ADVEEIEKEI RNGIMEASRS LKTFMTEKRK EEEARKRLLT YLKYIPELAR
SLSIFVTDGK KELAPKVQEE IQNKMIDLVV TKLNIKDKDL ELFKSYRVET L
|
|---|
| |