| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1656 |
|---|
| Symbol | |
|---|
| ID | 5104169 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1598915 |
|---|
| End bp | 1600051 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640507550 |
|---|
| Product | SufBD protein |
|---|
| Protein accession | YP_001191735 |
|---|
| Protein GI | 146304419 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0719] ABC-type transport system involved in Fe-S cluster assembly, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTCG TGGATCAAGA TAGCTTCCTC AAGTATATTT CGTCCTTGGG CTCCAAAGCA
GAACGAGAAG AGATTTTTCA GAAATATCTA ACCTTACCCT ATCAGGTAAT CAGCGACTCC
CCCACCATAA AGCACTACAC TGAGTGGTCT GTTTTTGATG CCCTCAATTT AGGTATAGAG
GGCACTCCCA TCAAGGACCT CTCTGTCCCG CTTGAGGGCT ATAATTCATT TGTTATTGGG
AATAACATAC CCCTGAATTT CTCACCACTT GACTCCGTAA GCTCAGGCCT GGTTAAGCCA
GAGGACCACA AGCTCGTGGC TTTAACCCTG GCGGGTTCCA GGAAGATATT GATTAACAAG
GGAGGGAAAT ACCTCGTTTA TAACAGATGT CAGGGAAAAG TCTTTTGTCC AGTTCTAGTA
GAGGTCAGTG TTCCAGATGG GGACAACGTG GACTTGATCT ACTATTCCGA CGGTTCGGAG
GGAGCCATGC CTTCCGCTGT GATCTCCCTG GACGTTCCAA AGGGCTCCTC CATGTCTTTC
TCCATAGTCA ACTCAAGCCG AGATTCCTAT GCCTATACCT ACACCAAGGG ATCGATCAAG
GGAGAGATCA ATTCCTCGAT TTTCTCCGTG GGCCAATCCC TAGGGCACAC GGAGTATCAC
GTGGAACTGT CAGATGAGGC AGTTGCCAAC TTTAACGCTA AGAGCCTCGG AATAGGAAAT
AATAGGGTCA ATGTTCTCGC CAACGTGAAT CACGTGGGAA GAAAGAGCGT TAGTAACGGG
GTACTGAAAG CAGTTGCCTC CGGTAGCTCC TACACGGTGA TTAGGGGAGA CGCGGTCATA
GGAGAGAACG CCATTGACTC CTCCACAACA ATACTGGGAA GGGCGCTCAT CATAGGCGAC
GATGCTAAGG CCGTGGTTGC GCCTATGCTC GAGGTAAAGA CTGGGAAAAT TATCACAGCG
AAGCACTCGG CCTCAGCCTC AAAGGTGAAT GAGGATCTCA TTTTCTATTT GGAGAACAGG
GGGCTAGACA AGAAGTGTGC CGAGGGACTC ATAATCAGGG GCTTCCTAAC CGACGATAAT
GATAACGACA TAATCAGGAA GCTTGTTGAG GACGTGATTA GCAAGATGGG ATATTAA
|
|---|
| Protein sequence | MPVVDQDSFL KYISSLGSKA EREEIFQKYL TLPYQVISDS PTIKHYTEWS VFDALNLGIE
GTPIKDLSVP LEGYNSFVIG NNIPLNFSPL DSVSSGLVKP EDHKLVALTL AGSRKILINK
GGKYLVYNRC QGKVFCPVLV EVSVPDGDNV DLIYYSDGSE GAMPSAVISL DVPKGSSMSF
SIVNSSRDSY AYTYTKGSIK GEINSSIFSV GQSLGHTEYH VELSDEAVAN FNAKSLGIGN
NRVNVLANVN HVGRKSVSNG VLKAVASGSS YTVIRGDAVI GENAIDSSTT ILGRALIIGD
DAKAVVAPML EVKTGKIITA KHSASASKVN EDLIFYLENR GLDKKCAEGL IIRGFLTDDN
DNDIIRKLVE DVISKMGY
|
|---|
| |