| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1556 |
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| Symbol | |
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| ID | 5104001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1513108 |
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| End bp | 1514133 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640507442 |
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| Product | histone deacetylase superfamily protein |
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| Protein accession | YP_001191635 |
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| Protein GI | 146304319 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0460927 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACGTATG GGGACTCATT AGGGATAGTC TGGGATGAAA GGTTTAGGGA GATCTCCTTC
TCCCACCCCA TGATAAGGGA CGTTTCCAAG AGCAGAATCG TGAGGTTCAG GGAGCTGGTC
TCAACTCTCA ATGTCTACTT CATATCTCCT AAACCTGCCA CGTACGAGGA TCTGCTCGAG
GTTCACGATG AGAGCCTTCT AAGAAAGATC AAGGAAGTTA GTTCCCTCCC TTACATTGGC
TTCCTAGATT CGGGGGACAC GGTTCATTAC CCTGGCATGT TTGACGATAT TCTTCTAGTT
GCGGGTTCGA CTCTCACGGC AATCTTCATG TCAAGGTTCT TTGACTCAAT TTACATTCCG
CTGGGGGGAT TTCATCATGC CACTAGATCA AGATCCATGG GTTTTTGCCC CATAAACGAC
GTTAACTTAG CGATATCGAG ACTCATGAAA ATGGGAGAAA GGGTCGCACT GGTTGACGTA
GACGCCCACC ACGCGAATGG AGTGGAGGAA ATGTTCTATG ACAAACCAGT GCTCAAGATC
AATATTTTCG CTTATGATGG CAAATTCTTC CCGGGAACCG GTGATTACAG GAGAAGGGGG
AAAGGAGAAG GGACGGGTTA TAACTTCAAT GTCGGGTTAC CTCTGGGCTC TGCTGACGAC
TCGTTTCAGG AGGCATTAAG GTTGCTCGAT GTGGTTGAAG ACTTCAAACC ATCAGTCCTA
CTCGTGGTTG CCGGGGTAGA TGGGCATAAG GATGACGGAC TCAAATCCCT CAATCTGACC
ACGAACTCCT TCAATTTACT GGGCCTAAAG GTGAGCAGGT TAGCTAGGAG GGTTAACGCA
AGGATTATTT CCTTTGGAGG AGGAGGCTAC GGTCCAGGTT CAGCACCCTC TATGTTTTCC
TTTGTGAAGG GACTCATGGG AAACAGGTCA GAGGATGAAA TGCCCACACA AGATGAGGAG
AAAAAGGCTT ACGTGAAAAA ATTAGTGGAT CTACTCCTTG AACGCCTTCC CAGTAGCCTT
GAGTAG
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| Protein sequence | MTYGDSLGIV WDERFREISF SHPMIRDVSK SRIVRFRELV STLNVYFISP KPATYEDLLE
VHDESLLRKI KEVSSLPYIG FLDSGDTVHY PGMFDDILLV AGSTLTAIFM SRFFDSIYIP
LGGFHHATRS RSMGFCPIND VNLAISRLMK MGERVALVDV DAHHANGVEE MFYDKPVLKI
NIFAYDGKFF PGTGDYRRRG KGEGTGYNFN VGLPLGSADD SFQEALRLLD VVEDFKPSVL
LVVAGVDGHK DDGLKSLNLT TNSFNLLGLK VSRLARRVNA RIISFGGGGY GPGSAPSMFS
FVKGLMGNRS EDEMPTQDEE KKAYVKKLVD LLLERLPSSL E
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