| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1378 |
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| Symbol | |
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| ID | 5104588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1353470 |
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| End bp | 1355443 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640507267 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001191460 |
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| Protein GI | 146304144 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1204] Superfamily II helicase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000404908 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACTTTC CACTGGCCGA GAGGTTCTTC AGGGAGTACG AGAGCAACAG GGATATCAAT
TACCTGATTT CCGCGCCCAC CGGTAGTGGG AAGACTCACA TTGCCAAGAG GGTTCTAGTC
GAAGACGAGG GAATATCTGT TTACGTCTCT CCCTTGAAGG CCTTGTCCAG GGAGGTATAT
CTCTCAGTTA GGGACAGAAC CAACGCCGTG ATGGCTGACT CGGACGTTTA TGAGGACGAC
CTAAGAAAGA TGAAGGGAGA CGTCCTCCTC GCTACCTATG AAAAGTTTGA CAGTGCAATA
CGCCATAACT ACACCTGGCT CAACGACGTC TCGAGAATCG TCATAGATGA GGTTCATAAC
GTCGAGACCG ACAGGGGGCT GGCACTTGAG AACCTTGTCC TCTGGGCCAA GTCCAGGAGA
GTCCCCGTGA TTGCCCTGAG CGCGACCCTT AGCGACCCTG AGAGATACGT GACTTGGTTA
AATGCAAAGC TAATTTCGCA CGAGAAGAGG GTAGTTCCCC TCCACGAGTG CGTGGCCTAT
CCCTACGTTC TCAAGTGCGG TAATTGGCAG GAGAACCTGA AACCGTCCAG GCTCACTCGT
CCCAGATTTG AGTTGTTGGT GTTAGTTCTC CAGAGGATAG TCTCCATGGG AAAGAATGCT
CTGGTCTTCG TGAAGAGCAG GAGGTCTGCA GAAACCCTGG CACAGGAGCT TCAGAGGAGG
GACTTCAGGG CTCATCACTA CCATAGCGGA ATGCCTCACG AGGACAGAAA GAAGGTTCTC
GACATGTTAT TGGAGGGAAA CCTCAACGTC GTGGTATCCA CCACCGCTCT GGGTCAGGGG
GTCAATCTCC CAGTTTATGC CGTCGTCTTT TACGAGCTAA AGTTGCCAAA CGTTGATGAG
AGGGGAGAAT TCAAGGGCTG GAAAGACATT TCCCCATCCG AGTTCAGGCA GATGGCTGGA
AGGGCAGGGA GGCCCAGGTA TGACAAGGAG GGAATGGTTA TCATCATAGC CAACTCCGAT
AAGTTTGCGA CCCAACTAGA GGAGAGGTAC TACCGTGGGA GTACTAGGGG TGAGGGAGTG
AAACCGGATC TGGACACTCT TTCCTTGGCC TTTGTGTCCT GGAATGACGG CGTTGAAATG
GATGAACTTG GAAGATCAAT AAACTCTACC TTCAACTTCA GGGGGGTAGG GTACACTCTC
GTCGAGTCCT CGATCTCGAG ACTAAGGGAT ATGAAGCTGG TCATGACGGA CCGAGGAGTT
ACAGTAACGC CTTTGGGAAG GGCAGTAGCA GTGAGCTACA TTGATGTAAA GGCCCTGTCA
GGCTTTCCCA TAGATAACAA GGACGCCGAC CTAGTGTCCG TGATAGCAGG TTCCCCTGCG
GTTGCACAGG CCTTGAGGGG ATGCAAAGAG GGAAGGGAGC TTCTCAACAG ATGGATGAAT
GGAAATAGTC TAGATGGAAT TTGCGAGAAA CTGACGTCGA AGGATCTCAT GGAGGTGATC
TCCAATGCCA AATGGATTTC CTTTGCCCTG TTTCGTGTTT TGAGGGCTCT AGGGGATGAC
AGGTATCGCA AGGCTCTGGA AATTCACGAC AGCCTCAAGT ACGGAGTGCC CTCGGAGGGC
GTGAAACTGG CTAGATCAGG TTTACCTAGA GATGCCGTGA TGAGCTTGAT CTCCCTGGAC
GTCAAGGATC TGAGGGAACT GTGCATGAAG GTAGGTTACA GGGAGCTCAG GGACGAACTG
AGAAGGTCCA ATGTTCAGAT CGAGGTGCTA TGCAGGAGCG TCTACTCCCA AGACCCCCTA
ACCTTTGATG TTAGGAGGGC AATACAGGAA TTTCGGCAAA GGGAATTTAG TCTCAGGGAG
GTATCCTCCA AGTTTGGAGA GGATGTTCTG AGAGAGATGG TGAGGTTGCG AGTTCTAAGG
AAGAGAGGGG ATAAGTACAT AATACGAGAT CTGGAACGTG ACACCACGGG ATAA
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| Protein sequence | MDFPLAERFF REYESNRDIN YLISAPTGSG KTHIAKRVLV EDEGISVYVS PLKALSREVY
LSVRDRTNAV MADSDVYEDD LRKMKGDVLL ATYEKFDSAI RHNYTWLNDV SRIVIDEVHN
VETDRGLALE NLVLWAKSRR VPVIALSATL SDPERYVTWL NAKLISHEKR VVPLHECVAY
PYVLKCGNWQ ENLKPSRLTR PRFELLVLVL QRIVSMGKNA LVFVKSRRSA ETLAQELQRR
DFRAHHYHSG MPHEDRKKVL DMLLEGNLNV VVSTTALGQG VNLPVYAVVF YELKLPNVDE
RGEFKGWKDI SPSEFRQMAG RAGRPRYDKE GMVIIIANSD KFATQLEERY YRGSTRGEGV
KPDLDTLSLA FVSWNDGVEM DELGRSINST FNFRGVGYTL VESSISRLRD MKLVMTDRGV
TVTPLGRAVA VSYIDVKALS GFPIDNKDAD LVSVIAGSPA VAQALRGCKE GRELLNRWMN
GNSLDGICEK LTSKDLMEVI SNAKWISFAL FRVLRALGDD RYRKALEIHD SLKYGVPSEG
VKLARSGLPR DAVMSLISLD VKDLRELCMK VGYRELRDEL RRSNVQIEVL CRSVYSQDPL
TFDVRRAIQE FRQREFSLRE VSSKFGEDVL REMVRLRVLR KRGDKYIIRD LERDTTG
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