| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1318 |
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| Symbol | |
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| ID | 5104569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1294134 |
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| End bp | 1297055 |
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| Gene Length | 2922 bp |
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| Protein Length | 973 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640507207 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_001191400 |
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| Protein GI | 146304084 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCTCA CGGTGAGGAT AAATGATAAA GTATATTCCG CTAACCCTGG GGAGACTATC
ATTGACGTTC TGAAAAGGAA CAACATTTAC GTACCCCACG TCTGCCTCAA CGAGGGTCTA
GTGCCCATAG AGAGCTGTGA CACTTGTCTG GTCAGGGTAA ATGGTAAGTT AATGAGGGCC
TGTTCCACCA GGGTTGAGGA CGGAATGACA ATAACCACTA ACGACGATAA GTCCAAAGGG
GCTAGAAAGG AGGCCATATC TAGGATACTT AGATATCACA AGCTATACTG CACAGTTTGC
GAGAACAATA ACGGAGATTG TGTCCTTCAT GAGGCCGTGA TTAAGGAGAA GGTCTTCCAT
CAAAGGTACG TTGAGAAACC CTACTCCCTA GATAATAGTG GGCCCTTTTA CGTTTATGAC
CCTGCACAAT GCATCCTTTG CGGGAGATGC GTCGAGGCAT GCCAAGACTT CGCCGTAAAT
GAGGTAATAT GGATCGACTG GAACCTGAAT CCGCCAAGGG TGGTGTGGGA TCAGGGTAAT
CCCATTGGAA ATTCTTCCTG CGTGAACTGT GGGACCTGCG TCACAGTCTG TCCCGTTAAT
GCCCTTATGG AGAAGGGAAT GTTGGGGGAG GCTGGACTCT TTACGTGGAT AAACCCAGAG
CTCAAGAAGA AGACAATAGA GGCAGTTGGG AAAGTTGAGG ACAACTTTAG CTTGCTCATG
ACAGTGAGCG AACTAGAATC CAAGGCGAGA CAATCACAGA TTAAGAAGAC CAAGACTGTG
TGCACTTACT GCGGAGTTGG TTGCTCCTTT GAGGTGTGGA CTAAGGGAAG GAAGATCCTG
AAGGTAGAGC CCAAACCTGA GTCACCAGCG AACGGGATCC TGACTTGCGT CAAGGGTAAG
TTTGGGTGGG ATTTCGTCAA TAGCCCAGAT AGGATAACTA AACCACTAAT TAGAGAGGGA
GATCACTTCA GGGAAGCCAG CTGGGATGAG GCAATCCAGC TTGTTGCGAG GAAGTTTAAG
GAAATCAAGG AGAGGTATGG CCCAGATTCC CTGGGCTTCA TTGCCTCAGA TAAAATGACC
AATGAGGAGG CTTACCTCCT TCAGAAGCTA GCTAGGGCAG TTGTGGGCAC GAACAACGTA
GATAACTCCT CTAGATATTG CCAATCTCCG GCTACAGTGG GTCTTTGGAG GACCGTTGGA
ATAGGAGGTG ATTCCGGGAC CATAAGGGAC ATTGAGAACG CTGATCTAAT CCTCATAGTG
GGGCATAACA CCACGGAAAG TCACCCCGTT GTGGGGAGTA AGGTTAAGAG GGCCCAAAAG
ATCAGGGGGG CCAAGATTGC CGTTATTGAC GTCAGGAAAC ACGAGATGGC AGAGAGAGCT
AACCTCTTCA TCAGGCCCAA GCCAGGTACA GATGCAGCGG TCTTGGCAGG GGTAGCGAAG
TATATCGTGG ACCAGGATTG GGTGGATCAC GAGTTCCTCA AGAGAGTTAA TGGTTTTGAG
GAGTTTAAGG AGACCATCAA GGGCTTCACG CTGGACTACG TTGAGAGCGT GTCTGGAGTG
CCCAGGGAAC AGATAATCAA ACTAGCTGAA ATGATACATC AAGCAAAGGG CGTAGCAGTG
TTGTGGGGGA TGGGTGTAAC TCAGCACTTA GGTGGGGCTG ACACTTCCAC CATCATATCC
GACCTTCTCC TATTAACCGG AAATTACGGA CGCCCAGGAA CCGGGGCTTT TCCCATGAGG
GGGCACAACA ACGTTCAAGG GGTCAGCGAC TTCGGTTGTC TACCAAACTA CATGGTAGGA
TACCAAAAGA TGGAGGAGAG CGTTATGTCC AAGTTCGAGG ACTCGTGGAG AACGACCCTT
AACAGAAAAC CTGGCCTGCA GATACCACAA ATGATAGAAG GGGTCCTCGA GGGAAAGATC
CATGCCCTTT ACGTCGTGGG AGAGGATACC GTGATGGTTG ACTGTGGAAC TCCTCTTACT
AGAAAGGCGT TGGAGAACGT GGACTTTCTT GTGGTTCAGG ACATGTTCAT GACAGAGACA
GCGAAGTTAG CTGACGTCAT ACTTCCAGCT GCGGCGAGTC TTGAAAAGGA TGGGACTTTC
GTCAACACAG AGAGGAGGAT ACAGCGGATC TACAAGGCCA TGGATCCCTT AGGTGAATCA
AAGCCTGACT GGGAAATAAT CCAAATGATA GCTAACGCCA TGGGAGCTAA CTGGAACTAT
CATCATCCCT CGGAGATCAT GGACGAGATC GCTAGGCTGA CCCCAATATT TGCTGGCGTT
TCCTATTCGA GGCTCGAGGG TTTCAATAGC CTGGTCTGGC CAGTGAACGA AGATGGAACT
GACACCCCTC TGCTTTACGT GAATTCCTTC GCCACTCCTG ATGGAAAGGC AATCCTCTAC
CCGCTGGAGT GGAAACCAAG ACCGCTGAAG GATGAGGTAC ACTCCATAGT GGTAAACACT
GGAAGGGTAC TTGAGCATTT TCACGGTGGT ACAATGACTG GAAGGGTTGA AGGTCTTAGG
AGAAAGTTCC CAGAAACGTT CGTGGAAATA TCCAAGGAAC TAGCTGAGAG GTACTCCATC
AAAAACGGAG ATCTAGTACT CGTTAAGTCA AAGTTTGGAG GGGAGATCAA GGCAAGGGCG
CTGGTCAGCG AAAGAGTGTC AGGAGAGGAA GTGTTTATTC CCCTCTTTGC CTCAGAACCC
TCAAAGGGTG TGAACAACTT GACAGGCCAA GAGTTTGATA AGGCTTCCGG AACTCCAGGC
TATAAGGATA CGCCCGTCTT GATCGAGAAG ATATCCAGCG GTGAGGGAAC TCCGTTACCA
AGGGATAACT GGAGGTTTCA CGTACAGGAG AGGAAGAGAC AGATCGGGAT TGAGGTGACC
AAGAAATGGA TGAGAGAGGA GTTCAAACCC TTGACAGAGT AA
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| Protein sequence | MSLTVRINDK VYSANPGETI IDVLKRNNIY VPHVCLNEGL VPIESCDTCL VRVNGKLMRA
CSTRVEDGMT ITTNDDKSKG ARKEAISRIL RYHKLYCTVC ENNNGDCVLH EAVIKEKVFH
QRYVEKPYSL DNSGPFYVYD PAQCILCGRC VEACQDFAVN EVIWIDWNLN PPRVVWDQGN
PIGNSSCVNC GTCVTVCPVN ALMEKGMLGE AGLFTWINPE LKKKTIEAVG KVEDNFSLLM
TVSELESKAR QSQIKKTKTV CTYCGVGCSF EVWTKGRKIL KVEPKPESPA NGILTCVKGK
FGWDFVNSPD RITKPLIREG DHFREASWDE AIQLVARKFK EIKERYGPDS LGFIASDKMT
NEEAYLLQKL ARAVVGTNNV DNSSRYCQSP ATVGLWRTVG IGGDSGTIRD IENADLILIV
GHNTTESHPV VGSKVKRAQK IRGAKIAVID VRKHEMAERA NLFIRPKPGT DAAVLAGVAK
YIVDQDWVDH EFLKRVNGFE EFKETIKGFT LDYVESVSGV PREQIIKLAE MIHQAKGVAV
LWGMGVTQHL GGADTSTIIS DLLLLTGNYG RPGTGAFPMR GHNNVQGVSD FGCLPNYMVG
YQKMEESVMS KFEDSWRTTL NRKPGLQIPQ MIEGVLEGKI HALYVVGEDT VMVDCGTPLT
RKALENVDFL VVQDMFMTET AKLADVILPA AASLEKDGTF VNTERRIQRI YKAMDPLGES
KPDWEIIQMI ANAMGANWNY HHPSEIMDEI ARLTPIFAGV SYSRLEGFNS LVWPVNEDGT
DTPLLYVNSF ATPDGKAILY PLEWKPRPLK DEVHSIVVNT GRVLEHFHGG TMTGRVEGLR
RKFPETFVEI SKELAERYSI KNGDLVLVKS KFGGEIKARA LVSERVSGEE VFIPLFASEP
SKGVNNLTGQ EFDKASGTPG YKDTPVLIEK ISSGEGTPLP RDNWRFHVQE RKRQIGIEVT
KKWMREEFKP LTE
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