| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1221 |
|---|
| Symbol | |
|---|
| ID | 5103835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 1195428 |
|---|
| End bp | 1196075 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640507113 |
|---|
| Product | bacterio-opsin activator |
|---|
| Protein accession | YP_001191306 |
|---|
| Protein GI | 146303990 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3413] Predicted DNA binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACTCTA GATATCCCCT GAAGCTTGTT ACCGTAGACT TGTTGCATGA GGGTTGCTGG
ACAAGTTTCC TTGATAACAA GGTTCAGGTC ATAGCCCATC ACAGTAACGG ACGTGTAATG
AGAGACCTAG TGGTCGGTAA ACCTGAAAGT TTTAAGGTCA TTAAGCGATT GGATAGATCA
ACGCGAATAA ACTCCATATC AAACGTGAGT TACCTTGATG ACGGGAGAGT CCTCGTTGAC
ATGATGCTAG ATTACAGAAA TTCTGTATTC TCCTTGCTGG ACGCCAGCAA TCTCTTCGTC
GTGGAACCAA CCATAGTTTA CGGTAATGAG ATCTGGAGCT TTCTCGCCTA CGAGCACCAG
GTTAATGAGA TCATACGTGA ACTTCGTGGA ATAACTAGGG TAAACGAGGT TAGAGTACAG
GACTTCGATG GACTGGAACT CAGTGAGGAG GAGCTGGAAG TCCTTTCAAC TGCCCTCGAA
ATGGGATATT TCAACGTGCC TAGAGAAGCT AACTTAAAGG ACGTGGCTAG GGCCACAGGG
AAATCGGTGA ACGCGGTGGC TTACTCCTTG AGGAATGGAG AGAGGAAAAT AATACGGGGA
ATTACGGAGT TGCTGAAAAG ATGGAGATAC CTGCCCAAAA CTTGGTGA
|
|---|
| Protein sequence | MYSRYPLKLV TVDLLHEGCW TSFLDNKVQV IAHHSNGRVM RDLVVGKPES FKVIKRLDRS
TRINSISNVS YLDDGRVLVD MMLDYRNSVF SLLDASNLFV VEPTIVYGNE IWSFLAYEHQ
VNEIIRELRG ITRVNEVRVQ DFDGLELSEE ELEVLSTALE MGYFNVPREA NLKDVARATG
KSVNAVAYSL RNGERKIIRG ITELLKRWRY LPKTW
|
|---|
| |