| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1212 |
|---|
| Symbol | |
|---|
| ID | 5103826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1185502 |
|---|
| End bp | 1186500 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640507104 |
|---|
| Product | transketolase, central region |
|---|
| Protein accession | YP_001191297 |
|---|
| Protein GI | 146303981 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATGA AGGGAATTTC CCAGGCAATA GCCCAGGCAA TATCTCAGGA GATGGAGAGG
AGGAGTGACA TCGTCGTCTT GGGGGAGGAC GTGACTTACT GGGGCGCAGT TTTCGGGTTC
ACCATGGGAC TCTTTGACAA GTTCGGCAGG AAGAGGGTGG TGGACACACC TATCACGGAG
CAAACTTTCA TGGGAATGGC AGTGGGAATG GCCTCAGTGG GACTTCATCC CGTAGTGTCG
CTCATGTTCG TAGACTTTCT GGGGGCCGGG TTTGATCAGA TGTACAACCA TATGGCTAAG
AACCACTACA TGTCGGGCGG ACAATTCCCC ATGCCGGTAA CTGTGATCAC AGCAATAGGA
GGAGGTTATG GAGACGCGGA ACAACACTCT CAAGTGCTTT ATGGACTCTT CGCTCACGTC
CCAGGTTTCA AGGTTGTGGT TCCGTCTAAC GCATACGACG CTAAGGGTTT AACCATTAGG
GCGTTGAGGG ATCCTAACCC TGTGGTCATA TTTGGTCACA AACTCCTCAC AGGGTTACCC
TTTCTACCCT ATGAGGGAGG AGAGGACGAG GTTCCTGAGG AACCCTATGA GCTGGAGTTT
GGGAAGGCCT CCGTGAGGAT GGAGGGGAGC GATCTGACCG TGGCATCTGC CGGACTGATG
GTCCACAGGG CAATGAGGGT TGCAGAGAAG TTGAGAAAGG AGGGAATTTC CGTGGAGGTT
GTGGATTTGA GGACCCTAGT CCCCCTGGAC GAGGAGACAC TCTCTAGGTC AGTAAAGAAG
ACTGGTAGGT TGCTCATCCT TGACGAGGAT TACATGAGCT ATGGGATGAC CGGCGAGGTC
ACGTTCAGGG TTCAGTCCAG AGCCTTAAGG GATCTGAAGG CCCCGATCCA AAGATTGGCA
GTCCCTGATG TTCCAATCCC CTTCAGTGAG CCCCTAGAGA AGGAGGTGAT TCCAGGGGAG
GCGAGAATAG AGGCCAAAAT CAGGGAAATG GTAAGCTAG
|
|---|
| Protein sequence | MRMKGISQAI AQAISQEMER RSDIVVLGED VTYWGAVFGF TMGLFDKFGR KRVVDTPITE
QTFMGMAVGM ASVGLHPVVS LMFVDFLGAG FDQMYNHMAK NHYMSGGQFP MPVTVITAIG
GGYGDAEQHS QVLYGLFAHV PGFKVVVPSN AYDAKGLTIR ALRDPNPVVI FGHKLLTGLP
FLPYEGGEDE VPEEPYELEF GKASVRMEGS DLTVASAGLM VHRAMRVAEK LRKEGISVEV
VDLRTLVPLD EETLSRSVKK TGRLLILDED YMSYGMTGEV TFRVQSRALR DLKAPIQRLA
VPDVPIPFSE PLEKEVIPGE ARIEAKIREM VS
|
|---|
| |