| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1171 |
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| Symbol | |
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| ID | 5104467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1136653 |
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| End bp | 1137603 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640507063 |
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| Product | CRISPR-associated HD domain-containing protein |
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| Protein accession | YP_001191256 |
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| Protein GI | 146303940 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1203] Predicted helicases |
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| TIGRFAM ID | [TIGR01596] CRISPR-associated endonuclease Cas3-HD |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.159368 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATGTT CACCGGACGA TCTATGTTCT CATCCCAACA AGCGCCTCGC GGACCACCTT
AATGAGGTAG GAACCACTGC ATCTTCGCTC ATCTCAGGGA GTCGTCCGGA GCTCTCCGAC
CCAGCCTATA TTGCTGGGGC ATACCACGAC GTTGGTAAGT ACACGACCTT CTTTCAGAAA
CATCTTCGTG GAGGTAAGGA TCCGCGATCC AGTCACGCTG AGATATCTTC CCTCATCGCA
TATTACGTCG CCAAGAGGGC ACTATCTTCC CTAGAACTTC CTATCCTCGT CTCACTAGCG
GTGAGATCTC ATCACGGCCA TCTCAAGGGG ATTGAGACTG TCAAGAGATG GGCCATGAAC
AAGTTGGATG ATCCAGGTGT CCTTGGACCC CAATTTCAGG ATCTATACAA GAGGATGGAC
AGGATCCTAG AGAATATGTC AAATATTAGG TATCACTCGC ATGTCGAGGG ATTCCTGGAG
CAAGATCTGA ACTCCACCCT CGAGGAGTAC GCTTCCGATC TGCTTCACCT CGAGGAGGAG
CTCAAGGCAG ATCAGTCAAA GGCCTGGGAG AGATATCTGG GAGGCCTGCT ACTGTTCTCA
TGTCTCATAG ACTCAGACAA GCATAGCGCC AGTGACACAT CCTTTCTTCC CCAGAATCCC
CCTTCACCCT CACTGATTAC CGAGTTCATA TCCTCGATCA AGAGTAACGA TAGGATGGCT
GGGATCAGGG AGAAGCTCAA CTCCCTTGTC TCGTCTACTC CGGTTAGCCG GACGGTAACC
TTGATTGCCC CGAGCGGATC GGGGAAGACG CTGTCCGGCG TTCTAACTGC ACTCAAGATG
GGGAAGTCGA GGTTGATCTA TGCTCTTCCC TACATTAGTA TTGTTGAGCA GGTTCACGAC
GTGCTCTCAA GGACGAGGAT GGACCCGCTC AAGTTCTATC ATCTATACTA G
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| Protein sequence | MECSPDDLCS HPNKRLADHL NEVGTTASSL ISGSRPELSD PAYIAGAYHD VGKYTTFFQK
HLRGGKDPRS SHAEISSLIA YYVAKRALSS LELPILVSLA VRSHHGHLKG IETVKRWAMN
KLDDPGVLGP QFQDLYKRMD RILENMSNIR YHSHVEGFLE QDLNSTLEEY ASDLLHLEEE
LKADQSKAWE RYLGGLLLFS CLIDSDKHSA SDTSFLPQNP PSPSLITEFI SSIKSNDRMA
GIREKLNSLV SSTPVSRTVT LIAPSGSGKT LSGVLTALKM GKSRLIYALP YISIVEQVHD
VLSRTRMDPL KFYHLY
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