| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1170 |
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| Symbol | |
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| ID | 5103518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1134536 |
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| End bp | 1135168 |
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| Gene Length | 633 bp |
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| Protein Length | 210 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640507062 |
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| Product | CRISPR-associated Cas family protein |
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| Protein accession | YP_001191255 |
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| Protein GI | 146303939 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1583] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
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| TIGRFAM ID | [TIGR01877] CRISPR-associated endoribonuclease Cas6 |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0816614 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGTTCC TCGTGAGGGG GACCGTCCCT GTTCACTACA ACTACCTAAT TCAATCTGCG
ATCTACCATC GACTTCCCAC GAGGTTGTCG AGGGCCCTAC ACAACAAAGG AGTAGTTGAG
GGTCCCAGGA GGTTCAAGAT GTTCACGTTC TCGAGACTCT ACGGCGACTT CACGAGGAGT
GATGAGGGCC TAGTTTACAG GGATAGGGCC TACCTCTGCT TCTCGTCTCC CCTGGAGAGG
GTGGTGATGG AGGTGTACAG GTCCTTCCTG AGGGATCCAG TCCTGAGGCT AGGGGGGAGC
GAGTTAAACC TCGAGGTAAT GAACGTGGTT GAACCACCGG AGCTGGGGAG CAAAACCGTG
GTCTACACCT TGTCACCGAT AGCCGTTTAC AGGAAGAGTG AAGTTGGGAC GAGATATTAC
TCACCGTACG AGAAGGAGTG GGAGCTCTTG ATCAGCCTAA ACTCCCTGAG GAAGTACCAC
GCCTTGAGGA GGAGGTATCT CAAGACTGGC CTCGTGGTGA GGCCGTTGAA AGCTGGGCTA
AGTCGGGTTA AGTACAAGGA CAACGTTGTG TTTGCCTGGA GGGGGGGAAT TCGAGATGAG
GGGACCAAAG TCCCTGCAGA TGGTGGTTTA TGA
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| Protein sequence | MSFLVRGTVP VHYNYLIQSA IYHRLPTRLS RALHNKGVVE GPRRFKMFTF SRLYGDFTRS
DEGLVYRDRA YLCFSSPLER VVMEVYRSFL RDPVLRLGGS ELNLEVMNVV EPPELGSKTV
VYTLSPIAVY RKSEVGTRYY SPYEKEWELL ISLNSLRKYH ALRRRYLKTG LVVRPLKAGL
SRVKYKDNVV FAWRGGIRDE GTKVPADGGL
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