| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1118 |
|---|
| Symbol | |
|---|
| ID | 5103591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1045882 |
|---|
| End bp | 1047240 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640507012 |
|---|
| Product | D-lactate dehydrogenase (cytochrome) |
|---|
| Protein accession | YP_001191205 |
|---|
| Protein GI | 146303889 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.410973 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGATTT CTTTGTCCGA AAACATTCTA AGGGAATTGG ATGGAATTAA GTGTTCGTTG
GAAGAAAGGA CAGATTTCCT CAATAATAGA GTAAGACCAG TCGTGGTGAC TTACCCATCT
AGAACTGAGG AAGTAGCGAA AATAGTAAAT ATTGCAAGAG AACATGGTTT ACCCATCGTA
GTCTGGGGTG GAGGTACCAG TTTAGCCGGG CACTTGGTAT GTGATGGTTG TATTTTAATT
GACATGAAGT TCATGGACAA GATAGTCGAG ATAAATGATA CGGAATGGTA CGTGAGAGTA
CAACCGGGCT TGATCCTTTC AAAATTAAAT GATGAGCTTA AAAAAATCGG CTTCTTCATA
CCTCCCGAGC CTGCTAGTTC CTTTGCATGT TCCGTGGGAG GAGTAGTCAA TAACGCCTCA
GGAGGTATGC GAAGTGTAAG GTACGGCACT TTCAGAGACT GGGTGCTTGC CTTAGAGGTG
GTTTTACCAT CTGGAAAGGT GATAAGAGTT GGTGAGCCGT TCGTCAAGAA TAGAGCCGGG
TACGACTTAG TTCACCTCTT CGTGGGTAGT GAGGGAACGC TTGGCATAGT GACGGAGATT
TGGTTCAAGA TCATTCCTGT CCCTGAAGAG GTAAAATACT CGATCATGAT GGAACTGTCT
GACTTCAGAC AAGGTACCGA GATAATCAGG GAACTTAGAA AGAATCGCGT CGTTATAGAT
GTGGCAGAAT ATATGGATGG ATTAGTAGCT AAAACAATAA ATAAACATTT TAATACTAAT
ATACCGGAGA GCGTCGGTGG GACGATTACA CTATCCTCTT CTTCGACTTA TCGAGAAAAA
ATTGAAAAAG TGTTAAGACA GCACTCTATT ACATTCACAG AGGTGGATGA GGATAAAACT
CTATCGGAAA GAGCCTTGGC AGGACTGGCC CTAAAGGCTG AGTGGAACGA AAGAGTTTCG
GAGGACATTG TTGTGCCCCT ATCTAAACTT GATGAAGCTT TTATGAAAAT TAAGGAACTT
GAGGAAAAGA GCGGCGTTAA GATAGCCATT TTGGGGCACA TAGCTGACGG AAATTTACAC
CCAAATATTC TGATCTCGAG TAGAGACGAT CCTCGACTTA CGAAAATCTA TGACGAGATA
GGAAGGATAG CAATAGTACT AGGAGGATCA ATTTCGGGTG AACATGGAAT AGGCTACATG
AAAGCTGATT TAATGAAGGA ACAGTTAACA GCTCATAACG GCATTGAGGT TCTTAAAATC
ATGAATGACA TTAAAGGTTG TATCGATCCG CACCACTTTA TGAATCCTGG CAAGTTCGTT
GAGCTAGCCT GGAGTCGTTA CCTAATTAAT AAGGATTAA
|
|---|
| Protein sequence | MWISLSENIL RELDGIKCSL EERTDFLNNR VRPVVVTYPS RTEEVAKIVN IAREHGLPIV
VWGGGTSLAG HLVCDGCILI DMKFMDKIVE INDTEWYVRV QPGLILSKLN DELKKIGFFI
PPEPASSFAC SVGGVVNNAS GGMRSVRYGT FRDWVLALEV VLPSGKVIRV GEPFVKNRAG
YDLVHLFVGS EGTLGIVTEI WFKIIPVPEE VKYSIMMELS DFRQGTEIIR ELRKNRVVID
VAEYMDGLVA KTINKHFNTN IPESVGGTIT LSSSSTYREK IEKVLRQHSI TFTEVDEDKT
LSERALAGLA LKAEWNERVS EDIVVPLSKL DEAFMKIKEL EEKSGVKIAI LGHIADGNLH
PNILISSRDD PRLTKIYDEI GRIAIVLGGS ISGEHGIGYM KADLMKEQLT AHNGIEVLKI
MNDIKGCIDP HHFMNPGKFV ELAWSRYLIN KD
|
|---|
| |