| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0992 |
|---|
| Symbol | |
|---|
| ID | 5104541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 915546 |
|---|
| End bp | 916082 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640506891 |
|---|
| Product | bacterio-opsin activator |
|---|
| Protein accession | YP_001191084 |
|---|
| Protein GI | 146303768 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3413] Predicted DNA binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.000881658 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00988265 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTAG AGGTTTACCC TGACCGTGGT TACCTGAGGA GTTGGCTCGT TTCACCATCT
AAGGAACTGG GGCGGAGGAT GGCATCACAT AAATCAGTGA AGAAGTTGAA TAGAGTTTAC
GTGAATAGGA GTGACGCCCT TCTGGATTTC CTTAACGTAT ATGAGGGATC GATCGCAGGT
TTACTTTACT CGAGGGAGGT TCTAATTCTG GGTAACTATA ACGAAATGGG TAAGGAGTTC
TGGACCTTCG TTACAGGAAG CGGAACTCTC AGCGAACTGA AGGAGGAACT CTCATCCCTG
GGAAAGATAG TTCGCGTCGA AGTGGAGGAC TTTTCGCCCA GTTATCCCTA TCTCACGGAT
ATGGAAAGGA AGGTGTTTTG GATGGCCCTC AACCATGGAT ATCTCAACTA TCCACGGGAG
ATTGAGGCTG AGGCACTGGC CAAGGTTTTG GGGGTGAGCA AAGTAACCTT TCTCTACCAC
TGGAGGAACG TCCAGAGAAA GATTCTGAGG TATGTGTCGG ATCATCTGAC GTTTTGA
|
|---|
| Protein sequence | MNLEVYPDRG YLRSWLVSPS KELGRRMASH KSVKKLNRVY VNRSDALLDF LNVYEGSIAG
LLYSREVLIL GNYNEMGKEF WTFVTGSGTL SELKEELSSL GKIVRVEVED FSPSYPYLTD
MERKVFWMAL NHGYLNYPRE IEAEALAKVL GVSKVTFLYH WRNVQRKILR YVSDHLTF
|
|---|
| |