| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0820 |
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| Symbol | |
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| ID | 5105143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 751519 |
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| End bp | 752442 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640506725 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001190919 |
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| Protein GI | 146303603 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.206414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTTATGT CAAGAAACGA AAGTAGAATA CTAGCCCTTA CAATCTCGTC TATTATTGCA
ATGATAGTTA TAGGAGGAGC AATTTACGTT CTAGGCTCCA TGAAGTTGCT ACCTGGAAAC
TACATCCTCT ATCTGGAGTT GGTGATCTGG ATAGTTGGAG TTCTCCTAGT TACTTACCTT
TTCTCTGTCC TGATTAGGAG GCGTCTCTCC ACTGTAATTG GGGTAGATAA CGCATCCTCG
CTAGGTTTCG TAATCCGGGT TATAGGCTAT GCCCTAGCCC TTGCGGGCGC AGTGTCTGTA
TTCAAGGTTG GTTTAGGTGA AGCCCTAGCG GCGGGAGGAT TTGCAGGCCT AGTTCTCGGA
CTTGCATCTC AAGACGTTCT CTCTAACGTA TTTGGAGGAA TCATGCTCCT CTTATCTCGT
CCATATAAGG TTGGACAACG CATAACAGTG TCAACGTGGC AATACGGCCT AGACTTTCCT
ACCTATTCGC CCAAGTACTT TTCCACAGAC TATCTAATAC CTGGATACAC AGGCACAGTG
GTCGACATTA CTCTCCTCTA CACCATTATA CAGACCGACG AGTTGGCGGA GTTGAGGATA
CCGAACAGCA TCATGATACA AGCAGCTATC TTTGTCCACG ATAAGGAGGA AAAACGCAAG
GTGAGGACCA GGTACGAGAT CTCAAAGGAT TTCGACCCAG ACATGGTTGC AGAGAAGATA
AAGGAAGAAC TGAGCCATAT GGACAACCTA CTCGCTCCGC CAGTTGTTAG GGTACTTGAA
GCAACTCAAA CAACCTTCGT CTTTGGAATT GATGTGATTG CTAAGTCTGT ATATGAAGAA
CCAGTTAGGA GCGAAGTAAT AAAGAGGGTT ACAAGAGTAG TTAGATCTCT TTCTCAGGAA
GAGAAAGTAA ATGGAAGTAA ATAG
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| Protein sequence | MVMSRNESRI LALTISSIIA MIVIGGAIYV LGSMKLLPGN YILYLELVIW IVGVLLVTYL
FSVLIRRRLS TVIGVDNASS LGFVIRVIGY ALALAGAVSV FKVGLGEALA AGGFAGLVLG
LASQDVLSNV FGGIMLLLSR PYKVGQRITV STWQYGLDFP TYSPKYFSTD YLIPGYTGTV
VDITLLYTII QTDELAELRI PNSIMIQAAI FVHDKEEKRK VRTRYEISKD FDPDMVAEKI
KEELSHMDNL LAPPVVRVLE ATQTTFVFGI DVIAKSVYEE PVRSEVIKRV TRVVRSLSQE
EKVNGSK
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