| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0720 |
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| Symbol | |
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| ID | 5103758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 657336 |
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| End bp | 657989 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640506624 |
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| Product | uracil-DNA glycosylase superfamily protein |
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| Protein accession | YP_001190819 |
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| Protein GI | 146303503 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1573] Uracil-DNA glycosylase |
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| TIGRFAM ID | [TIGR00758] uracil-DNA glycosylase, family 4 |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.455468 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATACG CAGATATTTC GGAACTAAAC AGGACACTTT TAGCCTGTAA TCTTTGCCCG
AGGTTAAGGG CTTTTGCCGA GGACGTTGCC CTCAATAGAA GAAGGTTTAA CCAAGAATAC
TGGGGAAAAC CCGTTCCAGG ATTTGGAGAC CCCAGGGCCA AACTACTTAT CGTGGGATTG
GCTCCTGCTG CCCATGGAGG AAACAGAACG GGGAGACCAT TCACAGGGGA TGAAACGGGG
AAATGGGTCA TCGGAGGACT TTACGAACTT GGTCTATCCA ACCTAAGGGA AGGCGTAAGC
AGAGATGATG GACTGGTCCT GAAGGGGGTA TTCCTCACCA ATGCCGTGAG TTGTGCCCCT
CCCAAGAACA TGGTGAGAAC TCAGGAGATA GTAAACTGCT CCACTCATCT CAAAGAGACA
GTGGAACTGC TAAGGGAGCT TAAGGTAATT CTAGCCCTCG GTAGTGTGGC CTTCAGGTCT
GTTTCCCTAG TCCTAGGTGT TAAGGAAAAC TTCGCCCACC TCAAGGTAAC GTCCAAAAGG
GGAATTTACC TCGTGGGAAG TTATCACCCT AGCCCCCTAA ACACCAGAAC AGGAAGGCTA
ACCTGGGAGG AATGGTTACG CGTTCTCAGA TACTCATGGG AGCTTGCAAA CTAG
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| Protein sequence | MKYADISELN RTLLACNLCP RLRAFAEDVA LNRRRFNQEY WGKPVPGFGD PRAKLLIVGL
APAAHGGNRT GRPFTGDETG KWVIGGLYEL GLSNLREGVS RDDGLVLKGV FLTNAVSCAP
PKNMVRTQEI VNCSTHLKET VELLRELKVI LALGSVAFRS VSLVLGVKEN FAHLKVTSKR
GIYLVGSYHP SPLNTRTGRL TWEEWLRVLR YSWELAN
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